Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01021776.1 Corchorus olitorius cultivar O-4 contig21809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51616
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Found at i:69 original size:25 final size:24
Alignment explanation
Indices: 41--92 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
31 GTGGATTGTA
*
41 AAATAAATTGAATAATTAAGACATT
1 AAATAAATTGAAGAATTAA-ACATT
*
66 AAATAAATTTAAGAATTAAACATT
1 AAATAAATTGAAGAATTAAACATT
90 AAA
1 AAA
93 AATTCAAGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
AAATAAATTGAAGAATTAAACATT
Found at i:101 original size:22 final size:25
Alignment explanation
Indices: 41--101 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
31 GTGGATTGTA
* *
41 AAATAAATTGAATAATTAAGACATT
1 AAATAAATTCAAGAATTAAGACATT
*
66 AAATAAATTTAAGAATTAA-ACATT
1 AAATAAATTCAAGAATTAAGACATT
90 -AA-AAATTCAAGA
1 AAATAAATTCAAGA
102 CTGACCCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 9 0.27
23 2 0.06
24 5 0.15
25 17 0.52
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.30
Consensus pattern (25 bp):
AAATAAATTCAAGAATTAAGACATT
Found at i:3601 original size:32 final size:32
Alignment explanation
Indices: 3560--3759 Score: 224
Period size: 32 Copynumber: 6.2 Consensus size: 32
3550 GTGCCGGGCA
3560 TTTTCTTCAATATTTGCCACAATTTAGTGGCG
1 TTTTCTTCAATATTTGCCACAATTTAGTGGCG
*
3592 TTTTCTTCAATATTTGCCACAATTTTGTGGCG
1 TTTTCTTCAATATTTGCCACAATTTAGTGGCG
*
3624 TTTTCTTCAATATATGCCACAATTTAGTGGCG
1 TTTTCTTCAATATTTGCCACAATTTAGTGGCG
* * *
3656 TTTTCTTCAATATTTGCCACAATTTTGTAGCA
1 TTTTCTTCAATATTTGCCACAATTTAGTGGCG
* * **
3688 TTTTATTTAA-ATTTTGCCACTAA-ACAGTGGCG
1 TTTTCTTCAATA-TTTGCCAC-AATTTAGTGGCG
** * * * * *
3720 TTTGGTTCTATAGTAGTCACTATTTAGTGGCG
1 TTTTCTTCAATATTTGCCACAATTTAGTGGCG
3752 TTTTCTTC
1 TTTTCTTC
3760 GGTAAACGCC
Statistics
Matches: 138, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
31 2 0.01
32 133 0.96
33 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.45
Consensus pattern (32 bp):
TTTTCTTCAATATTTGCCACAATTTAGTGGCG
Found at i:4137 original size:9 final size:9
Alignment explanation
Indices: 4123--4150 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
4113 GTGCCAGGGT
4123 GCCACCATC
1 GCCACCATC
4132 GCCACCATC
1 GCCACCATC
4141 GCCACCATC
1 GCCACCATC
4150 G
1 G
4151 TCGGCACTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.21, C:0.54, G:0.14, T:0.11
Consensus pattern (9 bp):
GCCACCATC
Found at i:5333 original size:55 final size:55
Alignment explanation
Indices: 4995--5330 Score: 519
Period size: 55 Copynumber: 6.1 Consensus size: 55
4985 TTGGAAAGGG
* * *
4995 AAAACAGCAGGCAACTTGCTGTATTTAAACAGAAAATGTTGAGTGCAAGAACCAC
1 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAACAACCAC
* *
5050 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATATTAAGTTCAACAACCAC
1 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAACAACCAC
* * *
5105 AAAACAGCAGGCAACTTGCTGTATTTAAACAGAAAATTTTAAGTTCAACAACCAC
1 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAACAACCAC
* * *
5160 AAAACAGCAAGCAACTTGTTGTATTTAAACAGAAAATTTTAAGTTCAACAACCAC
1 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAACAACCAC
*
5215 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAGCAACCAC
1 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAACAACCAC
* * * *
5270 ACAACAACAGGCAACTTGATGTATTTAAACAGAAAATGTTAAGTGCAACAATCAC
1 AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAACAACCAC
*
5325 ACAACA
1 AAAACA
5331 ACATATTTAA
Statistics
Matches: 263, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 263 1.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (55 bp):
AAAACAGCAGGCAACTTGTTGTATTTAAACAGAAAATGTTAAGTGCAACAACCAC
Found at i:6501 original size:21 final size:21
Alignment explanation
Indices: 6475--6520 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
6465 TGTGAGTTTG
6475 GGGATTTAGCCTGCTGCCACT
1 GGGATTTAGCCTGCTGCCACT
*
6496 GGGATTTGGCCTGCTGCCACT
1 GGGATTTAGCCTGCTGCCACT
6517 GGGA
1 GGGA
6521 ATCTCACGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.13, C:0.26, G:0.35, T:0.26
Consensus pattern (21 bp):
GGGATTTAGCCTGCTGCCACT
Found at i:6693 original size:32 final size:32
Alignment explanation
Indices: 6652--6712 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
6642 TCTTCATTTC
6652 TTAAACTTCCTAAAACAGTAATTAAACAGTTA
1 TTAAACTTCCTAAAACAGTAATTAAACAGTTA
6684 TTAAACTTCCTAAAACAGTAATTAAACAG
1 TTAAACTTCCTAAAACAGTAATTAAACAG
6713 AAAAAACAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.48, C:0.16, G:0.07, T:0.30
Consensus pattern (32 bp):
TTAAACTTCCTAAAACAGTAATTAAACAGTTA
Found at i:6799 original size:51 final size:49
Alignment explanation
Indices: 6695--6836 Score: 142
Period size: 51 Copynumber: 2.9 Consensus size: 49
6685 TAAACTTCCT
* * * * * *
6695 AAAACAGTAATTAAAC-AGAAAAAACAATAATTAATAGAAAATGCAAGA
1 AAAACAGTTATTAAACTAAAAAAAACAATAATAAACAGAAAAGGCAACA
*
6743 AAAACAGTTATTAAACTAAAAAAAAGAAGTAAATAAACAGAAAAGGCAACA
1 AAAACAGTTATTAAACTAAAAAAAACAA-T-AATAAACAGAAAAGGCAACA
* ****
6794 AAAACAGTTTTTAAACTTCCTAAAACAATAATTAAACAGAAAA
1 AAAACAGTTATTAAACTAAAAAAAACAATAA-TAAACAGAAAA
6837 AACAGTAATT
Statistics
Matches: 77, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
48 15 0.19
49 11 0.14
50 13 0.17
51 38 0.49
ACGTcount: A:0.62, C:0.11, G:0.09, T:0.18
Consensus pattern (49 bp):
AAAACAGTTATTAAACTAAAAAAAACAATAATAAACAGAAAAGGCAACA
Found at i:6850 original size:19 final size:20
Alignment explanation
Indices: 6815--6855 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
6805 TAAACTTCCT
6815 AAAACAATAATTAAACAGAA
1 AAAACAATAATTAAACAGAA
*
6835 AAAACAGTAATT-AACAGAA
1 AAAACAATAATTAAACAGAA
6854 AA
1 AA
6856 TGCAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.68, C:0.10, G:0.07, T:0.15
Consensus pattern (20 bp):
AAAACAATAATTAAACAGAA
Found at i:6904 original size:19 final size:20
Alignment explanation
Indices: 6860--6905 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
6850 AGAAAATGCA
* *
6860 AGAAAAATAGTTATTAAACT
1 AGAAAAACAGTAATTAAACT
*
6880 AAAAAAACAGTAATTAAAC-
1 AGAAAAACAGTAATTAAACT
6899 AGAAAAA
1 AGAAAAA
6906 GCAACAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.65, C:0.07, G:0.09, T:0.20
Consensus pattern (20 bp):
AGAAAAACAGTAATTAAACT
Found at i:6904 original size:68 final size:71
Alignment explanation
Indices: 6742--6905 Score: 190
Period size: 69 Copynumber: 2.3 Consensus size: 71
6732 AAAATGCAAG
* * *
6742 AAAAACAGTTATTAAACTAAAAAAAAGAAGTAAATAAACAGAAAAGGCAACAAAAACAGTTTTTA
1 AAAAACAGTAATTAAAC-AGAAAAAAGAAGTAAATAAACAGAAAAGGCAACAAAAACAGTTATTA
**
6807 AACTTCC
65 AACTTAA
* * * * * * *
6814 TAAAACAATAATTAAACAGAAAAAA-CAGT-AATTAACAGAAAATGCAAGAAAAATAGTTATTAA
1 AAAAACAGTAATTAAACAGAAAAAAGAAGTAAATAAACAGAAAAGGCAACAAAAACAGTTATTAA
6877 AC-TAA
66 ACTTAA
6882 AAAAACAGTAATTAAACAGAAAAA
1 AAAAACAGTAATTAAACAGAAAAA
6906 GCAACAAAAA
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
68 23 0.29
69 31 0.40
70 3 0.04
71 7 0.09
72 14 0.18
ACGTcount: A:0.62, C:0.10, G:0.09, T:0.19
Consensus pattern (71 bp):
AAAAACAGTAATTAAACAGAAAAAAGAAGTAAATAAACAGAAAAGGCAACAAAAACAGTTATTAA
ACTTAA
Found at i:6915 original size:49 final size:49
Alignment explanation
Indices: 6815--6955 Score: 178
Period size: 49 Copynumber: 2.9 Consensus size: 49
6805 TAAACTTCCT
* * * *
6815 AAAACAATAATTAAAC-AGAAAAAACAGTAATT-AACAGAAAATGCAAGA
1 AAAACAGTTATTAAACTA-AAAAAACAGTAATTAAACAGAAAAAGCAACA
*
6863 AAAATAGTTATTAAACTAAAAAAACAGTAATTAAACAGAAAAAGCAACA
1 AAAACAGTTATTAAACTAAAAAAACAGTAATTAAACAGAAAAAGCAACA
***
6912 AAAACAGTTATTAAACGTTCTAAAACAGTAATTAAACAGAAAAA
1 AAAACAGTTATTAAAC-TAAAAAAACAGTAATTAAACAGAAAAA
6956 ACAGTTATTA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
48 27 0.33
49 30 0.37
50 24 0.30
ACGTcount: A:0.62, C:0.11, G:0.09, T:0.18
Consensus pattern (49 bp):
AAAACAGTTATTAAACTAAAAAAACAGTAATTAAACAGAAAAAGCAACA
Found at i:6938 original size:21 final size:21
Alignment explanation
Indices: 6912--6989 Score: 97
Period size: 21 Copynumber: 3.8 Consensus size: 21
6902 AAAAGCAACA
*
6912 AAAACAGTTATTAAACGTTCT
1 AAAACAGTAATTAAACGTTCT
**
6933 AAAACAGTAATTAAACAG--AA
1 AAAACAGTAATTAAAC-GTTCT
*
6953 AAAACAGTTATTAAACGTTCT
1 AAAACAGTAATTAAACGTTCT
6974 AAAACAGTAATTAAAC
1 AAAACAGTAATTAAAC
6990 AGAAAAAACA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 1 0.02
20 15 0.32
21 30 0.64
22 1 0.02
ACGTcount: A:0.53, C:0.13, G:0.09, T:0.26
Consensus pattern (21 bp):
AAAACAGTAATTAAACGTTCT
Found at i:6950 original size:118 final size:120
Alignment explanation
Indices: 6675--6966 Score: 473
Period size: 120 Copynumber: 2.5 Consensus size: 120
6665 AACAGTAATT
* *
6675 AAACAGTTATTAAACTTCCTAAAACAGTAATTAAACAGAAAAAACAATAATTAATAGAAAATGCA
1 AAACAGTTATTAAACTTCCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCA
*
6740 AGAAAAACAGTTATTAAACTAAAAAAAAGAAGTAAATAAACAGAAAAGGCAACAA
66 AGAAAAACAGTTATTAAACTAAAAAAAAGAAGTAAATAAACAGAAAAAGCAACAA
* *
6795 AAACAGTTTTTAAACTTCCTAAAACAATAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCA
1 AAACAGTTATTAAACTTCCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCA
* * *
6860 AGAAAAATAGTTATTAAACT-AAAAAAA-CAGTAATTAAACAGAAAAAGCAACAA
66 AGAAAAACAGTTATTAAACTAAAAAAAAGAAGTAAATAAACAGAAAAAGCAACAA
*
6913 AAACAGTTATTAAACGTT-CTAAAACAGTAATTAAACAGAAAAAACAGTTATTAA
1 AAACAGTTATTAAAC-TTCCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAA
6967 ACGTTCTAAA
Statistics
Matches: 160, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
118 71 0.44
119 9 0.06
120 80 0.50
ACGTcount: A:0.59, C:0.11, G:0.09, T:0.21
Consensus pattern (120 bp):
AAACAGTTATTAAACTTCCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCA
AGAAAAACAGTTATTAAACTAAAAAAAAGAAGTAAATAAACAGAAAAAGCAACAA
Found at i:6957 original size:41 final size:42
Alignment explanation
Indices: 6911--7273 Score: 215
Period size: 41 Copynumber: 8.4 Consensus size: 42
6901 AAAAAGCAAC
6911 AAAAACAGTTATTAAACGTT-CTAAAACAGTAATTAAACAGA
1 AAAAACAGTTATTAAACGTTCCTAAAACAGTAATTAAACAGA
6952 AAAAACAGTTATTAAACGTT-CTAAAACAGTAATTAAACAGA
1 AAAAACAGTTATTAAACGTTCCTAAAACAGTAATTAAACAGA
* * ** * * *
6993 AAAAACAGTAATT-AACAGAAAATACAAGAAAAATAGTTATTAAAC-TA
1 AAAAACAGTTATTAAAC-G----TTC--CTAAAACAGTAATTAAACAGA
*
7040 AAAAACAGTTACTAAAC-TTCCTAAAACAGTAATTAAACAGA
1 AAAAACAGTTATTAAACGTTCCTAAAACAGTAATTAAACAGA
* * ** * *
7081 AAAAACAGTAATT-AACAGAAAATGCAAGAAAAATAGTTATTAAACTA-A
1 AAAAACAGTTATTAAAC-G----TTC--CTAAAACAGTAATTAAAC-AGA
* *
7129 AAAAATAGTTACTAAAC-TTCCTAAAACAGTAATTAAACAGA
1 AAAAACAGTTATTAAACGTTCCTAAAACAGTAATTAAACAGA
* ** ** * *
7170 AAAAACAGTAATTAACAAAAATTGCAAGAAAAATAGTTATTAAACTA-A
1 AAAAACAGTTATT---AAACGTT-C--CTAAAACAGTAATTAAAC-AGA
* * *
7218 AAAAATAGTTACTAAAC-TTCCTAAAATAGTAATTAAACAGA
1 AAAAACAGTTATTAAACGTTCCTAAAACAGTAATTAAACAGA
*
7259 AAAAACAGTAATTAA
1 AAAAACAGTTATTAA
7274 CAGAAAATGC
Statistics
Matches: 244, Mismatches: 48, Indels: 60
0.69 0.14 0.17
Matches are distributed among these distances:
40 22 0.09
41 119 0.49
42 2 0.01
43 3 0.01
44 5 0.02
45 6 0.02
46 3 0.01
47 12 0.05
48 67 0.27
49 5 0.02
ACGTcount: A:0.57, C:0.11, G:0.09, T:0.23
Consensus pattern (42 bp):
AAAAACAGTTATTAAACGTTCCTAAAACAGTAATTAAACAGA
Found at i:6958 original size:20 final size:20
Alignment explanation
Indices: 6933--7014 Score: 105
Period size: 20 Copynumber: 4.1 Consensus size: 20
6923 TAAACGTTCT
6933 AAAACAGTAATTAAACAGAA
1 AAAACAGTAATTAAACAGAA
* **
6953 AAAACAGTTATTAAAC-GTTCT
1 AAAACAGTAATTAAACAG--AA
6974 AAAACAGTAATTAAACAGAA
1 AAAACAGTAATTAAACAGAA
6994 AAAACAGTAATT-AACAGAA
1 AAAACAGTAATTAAACAGAA
7013 AA
1 AA
7015 TACAAGAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
19 10 0.19
20 27 0.51
21 15 0.28
22 1 0.02
ACGTcount: A:0.60, C:0.11, G:0.10, T:0.20
Consensus pattern (20 bp):
AAAACAGTAATTAAACAGAA
Found at i:7097 original size:19 final size:20
Alignment explanation
Indices: 7062--7102 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7052 TAAACTTCCT
7062 AAAACAGTAATTAAACAGAA
1 AAAACAGTAATTAAACAGAA
7082 AAAACAGTAATT-AACAGAA
1 AAAACAGTAATTAAACAGAA
7101 AA
1 AA
7103 TGCAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.66, C:0.10, G:0.10, T:0.15
Consensus pattern (20 bp):
AAAACAGTAATTAAACAGAA
Found at i:7134 original size:20 final size:20
Alignment explanation
Indices: 7109--7146 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7099 AAAATGCAAG
*
7109 AAAAATAGTTATTAAACTAA
1 AAAAATAGTTACTAAACTAA
7129 AAAAATAGTTACTAAACT
1 AAAAATAGTTACTAAACT
7147 TCCTAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (20 bp):
AAAAATAGTTACTAAACTAA
Found at i:7156 original size:89 final size:89
Alignment explanation
Indices: 6933--7304 Score: 617
Period size: 89 Copynumber: 4.2 Consensus size: 89
6923 TAAACGTTCT
* * *
6933 AAAACAGTAATTAAAC-AGAAAAAACAGTTATTAAACGTT-CTAAAACAGTAATTAAACAGAAAA
1 AAAATAGTTATTAAACTA-AAAAAACAGTTACTAAAC-TTCCTAAAACAGTAATTAAACAGAAAA
*
6996 AACAGTAATTAACAGAAAATACAAGA
64 AACAGTAATTAACAGAAAATGCAAGA
7022 AAAATAGTTATTAAACT-AAAAAACAGTTACTAAACTTCCTAAAACAGTAATTAAACAGAAAAAA
1 AAAATAGTTATTAAACTAAAAAAACAGTTACTAAACTTCCTAAAACAGTAATTAAACAGAAAAAA
7086 CAGTAATTAACAGAAAATGCAAGA
66 CAGTAATTAACAGAAAATGCAAGA
*
7110 AAAATAGTTATTAAACTAAAAAAATAGTTACTAAACTTCCTAAAACAGTAATTAAACAGAAAAAA
1 AAAATAGTTATTAAACTAAAAAAACAGTTACTAAACTTCCTAAAACAGTAATTAAACAGAAAAAA
7175 CAGTAATTAACA-AAAATTGCAAGA
66 CAGTAATTAACAGAAAA-TGCAAGA
* *
7199 AAAATAGTTATTAAACTAAAAAAATAGTTACTAAACTTCCTAAAATAGTAATTAAACAGAAAAAA
1 AAAATAGTTATTAAACTAAAAAAACAGTTACTAAACTTCCTAAAACAGTAATTAAACAGAAAAAA
7264 CAGTAATTAACAGAAAATGCAAGA
66 CAGTAATTAACAGAAAATGCAAGA
*
7288 AAAACAGTTATTAAACT
1 AAAATAGTTATTAAACT
7305 TCCTAAAACA
Statistics
Matches: 271, Mismatches: 7, Indels: 10
0.94 0.02 0.03
Matches are distributed among these distances:
87 2 0.01
88 87 0.32
89 178 0.66
90 4 0.01
ACGTcount: A:0.58, C:0.11, G:0.09, T:0.22
Consensus pattern (89 bp):
AAAATAGTTATTAAACTAAAAAAACAGTTACTAAACTTCCTAAAACAGTAATTAAACAGAAAAAA
CAGTAATTAACAGAAAATGCAAGA
Found at i:7171 original size:177 final size:179
Alignment explanation
Indices: 6933--7304 Score: 628
Period size: 177 Copynumber: 2.1 Consensus size: 179
6923 TAAACGTTCT
* *
6933 AAAACAGTAATTAAAC-AGAAAAAACAGTTATTAAACGTTCTAAAACAGTAATTAAACAGAAAAA
1 AAAACAGTTATTAAACTAGAAAAAACAGTTACTAAACGTTCTAAAACAGTAATTAAACAGAAAAA
6997 ACAGTAATTAACAGAAAA-TACAAGAAAAATAGTTATTAAACT-AAAAAACAGTTACTAAACTTC
66 ACAGTAATTAACA-AAAATTACAAGAAAAATAGTTATTAAACTAAAAAAACAGTTACTAAACTTC
7060 CTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGA
130 CTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGA
* *
7110 AAAATAGTTATTAAACTA-AAAAAATAGTTACTAAAC-TTCCTAAAACAGTAATTAAACAGAAAA
1 AAAACAGTTATTAAACTAGAAAAAACAGTTACTAAACGTT-CTAAAACAGTAATTAAACAGAAAA
* *
7173 AACAGTAATTAACAAAAATTGCAAGAAAAATAGTTATTAAACTAAAAAAATAGTTACTAAACTTC
65 AACAGTAATTAACAAAAATTACAAGAAAAATAGTTATTAAACTAAAAAAACAGTTACTAAACTTC
*
7238 CTAAAATAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGA
130 CTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGA
7288 AAAACAGTTATTAAACT
1 AAAACAGTTATTAAACT
7305 TCCTAAAACA
Statistics
Matches: 183, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
176 6 0.03
177 91 0.50
178 86 0.47
ACGTcount: A:0.58, C:0.11, G:0.09, T:0.22
Consensus pattern (179 bp):
AAAACAGTTATTAAACTAGAAAAAACAGTTACTAAACGTTCTAAAACAGTAATTAAACAGAAAAA
ACAGTAATTAACAAAAATTACAAGAAAAATAGTTATTAAACTAAAAAAACAGTTACTAAACTTCC
TAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGA
Found at i:7186 original size:19 final size:19
Alignment explanation
Indices: 7151--7190 Score: 64
Period size: 20 Copynumber: 2.1 Consensus size: 19
7141 TAAACTTCCT
7151 AAAACAGTAATTAAACAGAA
1 AAAACAGTAATTAAACA-AA
7171 AAAACAGTAATT-AACAAA
1 AAAACAGTAATTAAACAAA
7189 AA
1 AA
7191 TTGCAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.20
19 4 0.20
20 12 0.60
ACGTcount: A:0.68, C:0.10, G:0.07, T:0.15
Consensus pattern (19 bp):
AAAACAGTAATTAAACAAA
Found at i:7223 original size:20 final size:20
Alignment explanation
Indices: 7198--7235 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7188 AAATTGCAAG
*
7198 AAAAATAGTTATTAAACTAA
1 AAAAATAGTTACTAAACTAA
7218 AAAAATAGTTACTAAACT
1 AAAAATAGTTACTAAACT
7236 TCCTAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.29
Consensus pattern (20 bp):
AAAAATAGTTACTAAACTAA
Found at i:7259 original size:247 final size:245
Alignment explanation
Indices: 6742--7331 Score: 579
Period size: 247 Copynumber: 2.4 Consensus size: 245
6732 AAAATGCAAG
* * * * *
6742 AAAAACAGTTATTAAACTAAAAAAAAGAAGTAAATAAACAGAAAAGGCAACAAAAACAGTTTTTA
1 AAAAACAGTAATT-AAC-AGAAAAAA-CAGT-AATAAACAGAAAA-GCAAGAAAAACAGTTATTA
*
6807 AACTTCCTAAAACAATAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGAAAAATAGTT
61 AACTTCCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGAAAAATAGTT
* ** **
6872 ATTAAACTAAAAAAACAGTAATTAAACAGAAAAAGCAACAAAAACAGTTATTAAACGTTCTAAAA
126 ATTAAACTAAAAAAACAGTAACTAAACAGAAAAAGCAACAAAAACAG-TAAAAAACGTAATAAAA
** *** * *
6937 CAGTAATTAAACAGAAAAAACAGTTATTAAACGTTCTAAAACAGTAATTAAACAGA
190 CAAAAATTAAACAGAAAAAACAGTTATTAAACGTAAAAAAACAGTAACTAAACACA
* * * *
6993 AAAAACAGTAATTAACAGAAAATACAAG-AA-AAATAGTTATTAAA-CTA-AAAAACAGTTACTA
1 AAAAACAGTAATTAACAGAAAAAAC-AGTAATAAACAG--A--AAAGCAAGAAAAACAGTTATTA
7054 AACTTCCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGAAAAATAGTT
61 AACTTCCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGAAAAATAGTT
* * ** * **
7119 ATTAAACTAAAAAAATAGTTACTAAACTTCCTAAAACAGTAA-TTAAACAG-AAAAAACAGTAAT
126 ATTAAACTAAAAAAACAGTAACTAAA---CAGAAAA-AGCAACAAAAACAGTAAAAAAC-GTAAT
* ** * * * * *
7182 -TAACAAAAATTGCA-AG-AAAAATAGTTATTAAAC-TAAAAAAATAGTTACTAAACTTCC
186 AAAACAAAAATTAAACAGAAAAAACAGTTATTAAACGTAAAAAAACAGTAACTAAAC-ACA
* * *
7239 TAAAATAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGAAAAACAGTTATTAAAC
1 AAAAACAGTAATT-AACAGAAAAAACAGTAATAAACAGAAAA-GCAAGAAAAACAGTTATTAAAC
7304 TTCCTAAAACAGTAATTAAACAGAAAAA
64 TTCCTAAAACAGTAATTAAACAGAAAAA
7332 GCAACAAACC
Statistics
Matches: 279, Mismatches: 43, Indels: 38
0.77 0.12 0.11
Matches are distributed among these distances:
244 3 0.01
245 14 0.05
246 37 0.13
247 160 0.57
248 21 0.08
249 11 0.04
250 17 0.06
251 16 0.06
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (245 bp):
AAAAACAGTAATTAACAGAAAAAACAGTAATAAACAGAAAAGCAAGAAAAACAGTTATTAAACTT
CCTAAAACAGTAATTAAACAGAAAAAACAGTAATTAACAGAAAATGCAAGAAAAATAGTTATTAA
ACTAAAAAAACAGTAACTAAACAGAAAAAGCAACAAAAACAGTAAAAAACGTAATAAAACAAAAA
TTAAACAGAAAAAACAGTTATTAAACGTAAAAAAACAGTAACTAAACACA
Found at i:7275 original size:19 final size:20
Alignment explanation
Indices: 7240--7280 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7230 TAAACTTCCT
*
7240 AAAATAGTAATTAAACAGAA
1 AAAACAGTAATTAAACAGAA
7260 AAAACAGTAATT-AACAGAA
1 AAAACAGTAATTAAACAGAA
7279 AA
1 AA
7281 TGCAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.66, C:0.07, G:0.10, T:0.17
Consensus pattern (20 bp):
AAAACAGTAATTAAACAGAA
Found at i:13778 original size:31 final size:31
Alignment explanation
Indices: 13740--13798 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
13730 CTACATCTGC
13740 GGCGTTTTTT-TGGAAAACGCCATTGATTCAT
1 GGCGTTTTTTAT-GAAAACGCCATTGATTCAT
* *
13771 GGCGTTTTTTATGTAAACGCCGTTGATT
1 GGCGTTTTTTATGAAAACGCCATTGATT
13799 GCTGAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (31 bp):
GGCGTTTTTTATGAAAACGCCATTGATTCAT
Found at i:16532 original size:69 final size:69
Alignment explanation
Indices: 16450--16588 Score: 217
Period size: 69 Copynumber: 2.0 Consensus size: 69
16440 AAAACTAACA
* *
16450 ACTAAGGAAAAAATGGTGGGAACACCATTAATTACATCTC-AATGCTAAAATTACATATAGAGAC
1 ACTAAGGAAAAAATGGTAGGAACACCATTAATTACATC-CAAATGCTAAAATTACATATAAAGAC
16514 AATGC
65 AATGC
* * *
16519 ACTAAGGAAAAAATGTTATGAACACCATTAATTACATCCAAATGCTAAAATTACGTATAAAGACA
1 ACTAAGGAAAAAATGGTAGGAACACCATTAATTACATCCAAATGCTAAAATTACATATAAAGACA
16584 ATGC
66 ATGC
16588 A
1 A
16589 TTTCAATCAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
68 1 0.02
69 63 0.98
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.24
Consensus pattern (69 bp):
ACTAAGGAAAAAATGGTAGGAACACCATTAATTACATCCAAATGCTAAAATTACATATAAAGACA
ATGC
Found at i:22110 original size:196 final size:196
Alignment explanation
Indices: 21776--22167 Score: 766
Period size: 196 Copynumber: 2.0 Consensus size: 196
21766 CCTCAGCCAC
21776 TGCAATTCATCATTCGGCTAGTAAGTTGGAACAACAATTTCTCGAAGCCTCTGCTTTTTCTCCAC
1 TGCAATTCATCATTCGGCTAGTAAGTTGGAACAACAATTTCTCGAAGCCTCTGCTTTTTCTCCAC
*
21841 CAGTGGCTAGCACTACAAGATTATTGAGCTGGAATCCTTCTCCCCCAGGCATGCTGAAAATTAAT
66 CAGTGGCTAGCACTACAAGATTATTGAGCTGGAATCCTCCTCCCCCAGGCATGCTGAAAATTAAT
21906 TCAGACGCTTCCTTTTGTTCCACTAGAAAGGAAGCGAGTCTAGGGGTTGTGATACGTGATTGTGG
131 TCAGACGCTTCCTTTTGTTCCACTAGAAAGGAAGCGAGTCTAGGGGTTGTGATACGTGATTGTGG
21971 A
196 A
*
21972 TGCAATTCATCATTCGGCTAGTAAGTTGGAACAACAATTTCTCGAGGCCTCTGCTTTTTCTCCAC
1 TGCAATTCATCATTCGGCTAGTAAGTTGGAACAACAATTTCTCGAAGCCTCTGCTTTTTCTCCAC
22037 CAGTGGCTAGCACTACAAGATTATTGAGCTGGAATCCTCCTCCCCCAGGCATGCTGAAAATTAAT
66 CAGTGGCTAGCACTACAAGATTATTGAGCTGGAATCCTCCTCCCCCAGGCATGCTGAAAATTAAT
22102 TCAGACGCTTCCTTTTGTTCCACTAGAAAGGAAGCGAGTCTAGGGGTTGTGATACGTGATTGTGG
131 TCAGACGCTTCCTTTTGTTCCACTAGAAAGGAAGCGAGTCTAGGGGTTGTGATACGTGATTGTGG
22167 A
196 A
22168 GGAAGTATTA
Statistics
Matches: 194, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
196 194 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (196 bp):
TGCAATTCATCATTCGGCTAGTAAGTTGGAACAACAATTTCTCGAAGCCTCTGCTTTTTCTCCAC
CAGTGGCTAGCACTACAAGATTATTGAGCTGGAATCCTCCTCCCCCAGGCATGCTGAAAATTAAT
TCAGACGCTTCCTTTTGTTCCACTAGAAAGGAAGCGAGTCTAGGGGTTGTGATACGTGATTGTGG
A
Found at i:22554 original size:1 final size:1
Alignment explanation
Indices: 22548--22575 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
22538 GATTTATGAT
22548 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
22576 CAACAATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:24375 original size:18 final size:18
Alignment explanation
Indices: 24348--24383 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
24338 TTATTTATAT
*
24348 CATTTTAAAAAAACTACC
1 CATTTAAAAAAAACTACC
24366 CATTTAAAAAAAACTACC
1 CATTTAAAAAAAACTACC
24384 AAAAACTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (18 bp):
CATTTAAAAAAAACTACC
Found at i:26317 original size:2 final size:2
Alignment explanation
Indices: 26305--26338 Score: 59
Period size: 2 Copynumber: 16.5 Consensus size: 2
26295 CTCTTTCCAA
26305 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26339 GAGTAATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 29 0.94
3 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:27141 original size:30 final size:30
Alignment explanation
Indices: 27084--27142 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
27074 GGTGGTGGGC
* *
27084 CAGGTGGCGGTTGTGGAGTTGGGGGTGGAG
1 CAGGTGGCGGTTGTGAAGTTGGAGGTGGAG
27114 CAGGTGGCGGTTGTGAA-TGTGGAGGTGGA
1 CAGGTGGCGGTTGTGAAGT-TGGAGGTGGA
27143 AGTGGCGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 25 0.96
ACGTcount: A:0.14, C:0.07, G:0.56, T:0.24
Consensus pattern (30 bp):
CAGGTGGCGGTTGTGAAGTTGGAGGTGGAG
Found at i:27984 original size:29 final size:29
Alignment explanation
Indices: 27942--27997 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
27932 CCTTGTACGG
*
27942 TGTTGAAAGCTTGTAATTGTGGTGTTGAT
1 TGTTGAAAACTTGTAATTGTGGTGTTGAT
27971 TGTTGAAAACTTGTAATTGTGGTGTTG
1 TGTTGAAAACTTGTAATTGTGGTGTTG
27998 TCAACTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.04, G:0.30, T:0.45
Consensus pattern (29 bp):
TGTTGAAAACTTGTAATTGTGGTGTTGAT
Found at i:28919 original size:33 final size:33
Alignment explanation
Indices: 28856--28919 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
28846 CATTAACCGC
**
28856 CACCACAACCACCACCGCCACCGCCACAACCAA
1 CACCACAACCACCACCGCCACAACCACAACCAA
* *
28889 CACCACAATCACCACCGCCACAACCGCAACC
1 CACCACAACCACCACCGCCACAACCACAACC
28920 TCCACAATCG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.36, C:0.56, G:0.06, T:0.02
Consensus pattern (33 bp):
CACCACAACCACCACCGCCACAACCACAACCAA
Found at i:28924 original size:15 final size:15
Alignment explanation
Indices: 28863--28939 Score: 52
Period size: 15 Copynumber: 5.3 Consensus size: 15
28853 CGCCACCACA
* *
28863 ACCACCACCGCCACC
1 ACCACAACCGCAACC
*
28878 GCCACAA-C-CAA-C
1 ACCACAACCGCAACC
* * *
28890 ACCACAATCACCACC
1 ACCACAACCGCAACC
*
28905 GCCACAACCGCAACC
1 ACCACAACCGCAACC
* *
28920 TCCACAATCGCAACC
1 ACCACAACCGCAACC
28935 ACCAC
1 ACCAC
28940 TGCCACAAAT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
12 7 0.15
13 3 0.06
14 3 0.06
15 34 0.72
ACGTcount: A:0.35, C:0.55, G:0.06, T:0.04
Consensus pattern (15 bp):
ACCACAACCGCAACC
Found at i:29479 original size:19 final size:17
Alignment explanation
Indices: 29443--29475 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
29433 AAAAACATCT
29443 ATATCTATATTATATAA
1 ATATCTATATTATATAA
29460 ATATCTATATTATATA
1 ATATCTATATTATATA
29476 TAAAAGTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATCTATATTATATAA
Found at i:29771 original size:21 final size:21
Alignment explanation
Indices: 29742--29785 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
29732 AAATCGTCCA
29742 TCGAAACGACAGAATTAGATC
1 TCGAAACGACAGAATTAGATC
* *
29763 TCGAGACGACAGAATTAGGTC
1 TCGAAACGACAGAATTAGATC
29784 TC
1 TC
29786 AAGATAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (21 bp):
TCGAAACGACAGAATTAGATC
Found at i:30571 original size:22 final size:22
Alignment explanation
Indices: 30543--30714 Score: 120
Period size: 22 Copynumber: 7.7 Consensus size: 22
30533 TGTCTCTGTG
30543 TGGTTATCAAAATTTCATAAGA
1 TGGTTATCAAAATTTCATAAGA
* * *
30565 TGGTTATTATAATTTCATGAGGA
1 TGGTTATCAAAATTTCAT-AAGA
*
30588 -GGTTATCAAAATTCCAT-AG-
1 TGGTTATCAAAATTTCATAAGA
*
30607 TGTCGTTACCAAAATTTCATAAGGA
1 TG--GTTATCAAAATTTCATAA-GA
* **
30632 -AGTTATCAAAATTTCATGGGA
1 TGGTTATCAAAATTTCATAAGA
* *
30653 AGGTTATCAAAATTTCAT-AGTG
1 TGGTTATCAAAATTTCATAAG-A
* * *
30675 TGGTTAACAAAATTTTATAGGA
1 TGGTTATCAAAATTTCATAAGA
*
30697 TCAGGTTATTAAAATTTC
1 T--GGTTATCAAAATTTC
30715 TTAAAAAGGT
Statistics
Matches: 114, Mismatches: 24, Indels: 22
0.71 0.15 0.14
Matches are distributed among these distances:
20 2 0.02
21 3 0.03
22 91 0.80
23 5 0.04
24 13 0.11
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (22 bp):
TGGTTATCAAAATTTCATAAGA
Found at i:30657 original size:66 final size:66
Alignment explanation
Indices: 30540--30714 Score: 210
Period size: 66 Copynumber: 2.6 Consensus size: 66
30530 TCTTGTCTCT
* * * *
30540 GTGTGGTTATCAAAATTTCATAAGATGGTTATTATAATTTCATGAGGAGGTTATCAAAATTCCAT
1 GTGTGGTTAACAAAATTTCATAAGATAGTTATCAAAATTTCATGAGGAGGTTATCAAAATTCCAT
30605 A
66 A
* * *
30606 GTGTCGTTACCAAAATTTCATAAGGA-AGTTATCAAAATTTCATG-GGAAGGTTATCAAAATTTC
1 GTGTGGTTAACAAAATTTCATAA-GATAGTTATCAAAATTTCATGAGG-AGGTTATCAAAATTCC
30669 ATA
64 ATA
* * *
30672 GTGTGGTTAACAAAATTTTATAGGATCAGGTTATTAAAATTTC
1 GTGTGGTTAACAAAATTTCATAAGAT-A-GTTATCAAAATTTC
30715 TTAAAAAGGT
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
65 4 0.04
66 73 0.78
67 3 0.03
68 13 0.14
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.37
Consensus pattern (66 bp):
GTGTGGTTAACAAAATTTCATAAGATAGTTATCAAAATTTCATGAGGAGGTTATCAAAATTCCAT
A
Found at i:30686 original size:44 final size:44
Alignment explanation
Indices: 30544--31762 Score: 187
Period size: 44 Copynumber: 28.1 Consensus size: 44
30534 GTCTCTGTGT
* * * * *
30544 GGTTATCAAAATTTCATAAGATGGTTATTATAATTTCATGAGGA
1 GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAGGA
* ** *
30588 GGTTATCAAAATTCCATAGTG-TCGTTACCAAAATTTCATAAGGA
1 GGTTATCAAAATTTCATAG-GAAGGTTATCAAAATTTCATAAGGA
* * *
30632 AGTTATCAAAATTTCATGGGAAGGTTATCAAAATTTCAT-AGTGT
1 GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAG-GA
* * * * **
30676 GGTTAACAAAATTTTATAGGATCAGGTTATTAAAATTTCTTAAAAA
1 GGTTATCAAAATTTCATAGGA--AGGTTATCAAAATTTCATAAGGA
** * * * * * *
30722 GGTTATTGAACTTTTATAGTG-TGGTTATCACAATTTTAT-AGAAA
1 GGTTATCAAAATTTCATAG-GAAGGTTATCAAAATTTCATAAG-GA
* * *
30766 GGTTATC---A----A-A-GAA-ATCATCAAAATGTCAT-AGCGA
1 GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAG-GA
* * * *
30800 GGTTATATATAAGAATTTCATAGTG-TGGTGAACAAAATTTCATAAGGA
1 GG-T-TAT-CAA-AATTTCATAG-GAAGGTTATCAAAATTTCATAAGGA
* * * * *
30848 GGTTA-CTAATATTTTATGGGGAGGTTATCAAAATTTCAT-AGTGT
1 GGTTATC-AAAATTTCATAGGAAGGTTATCAAAATTTCATAAG-GA
** * * * *
30892 GGTTATCAAAATTTTTTATTG-TGGTTATCAAAATTTCATATGAA
1 GGTTATCAAAATTTCATA-GGAAGGTTATCAAAATTTCATAAGGA
* * * *
30936 GGTTATAAAAGTCTCAATTTCATGAGG-A-G-TACCAAAATTTGATAA-AA
1 GGTTAT-CAA-----AATTTCAT-AGGAAGGTTATCAAAATTTCATAAGGA
* *
30983 GGTTATC-AAATCTCATA-G-AGTGATTATCGAAATTTCAT-AGAGA
1 GGTTATCAAAATTTCATAGGAAG-G-TTATCAAAATTTCATAAG-GA
* * * * * * *
31026 TCGGATATCAAAATTT-GTAGGAAGATCATCAAATTTTAAT-AGTGT
1 --GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAG-GA
* * * * *
31071 TGTTATAAAAATTTCAAAGCG-AGGTTATCAAAATTACATAATGTA
1 GGTTATCAAAATTTCATAG-GAAGGTTATCAAAATTTCATAA-GGA
* * * * * *
31116 -ATTATCTAAATTTCATA-GAGGGGTCAACAAAATTTTAT-AGAGA
1 GGTTATCAAAATTTCATAGGA-AGGTTATCAAAATTTCATAAG-GA
* * * * *
31159 GGTTATTAAAATTTCGTA--AAGAGTTTATCAAATTTTCAAAATTTGA
1 GGTTATCAAAATTTCATAGGAAG-G-TTATCAAAATTTCATAA--GGA
* * * **
31205 -TTTACCAAAATTTCATA-G-TGG---T----ATTTC-TGGGGA
1 GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAGGA
* * *
31238 GGTTATCAAAATTTCATAGTATGGTTA-CCAAA--T--T-AGGAA
1 GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAGG-A
* * * * *
31277 GGTTATTAAACTTTTATTATGG-A-GTAATCAAAATTTC--AGGGA
1 GGTTATCAAAATTTCA-TA-GGAAGGTTATCAAAATTTCATAAGGA
* * *
31319 GGATATCAAAATTTCATATGAAGGTTATCAAAATTTCAT-AGTA
1 GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAGGA
* * * * * *
31362 TGTAGATCAAAATTTCATAGGGAGATTAACAAAATTTCATAATGA
1 GGT-TATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAGGA
* * ** * *
31407 CGTTATAAAAAAATCATAGGAAAGTTATCAAAA-TT--T--GTA
1 GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAGGA
* * *
31446 -GTTATCAAGATTTCATAAGG-AGGTTATCAAAATTTTATAGGGA
1 GGTTATCAAAATTTCAT-AGGAAGGTTATCAAAATTTCATAAGGA
* * * *
31489 GGTTTATCAAAATTTTATAGGATGGTTTATCAAAATTTCGT-AGCAA
1 GG-TTATCAAAATTTCATAGGAAGG-TTATCAAAATTTCATAAG-GA
* * * * * * *
31535 GGTTATCACAATCTCATAGTG-TGATCATCAAAATTTC--AGGGT
1 GGTTATCAAAATTTCATAG-GAAGGTTATCAAAATTTCATAAGGA
* * * * *
31577 GTGATTA-CTAACAATTT-ATATGG-AGGTTTTTAAATTTTCATAACGT
1 G-G-TTATC-AA-AATTTCATA-GGAAGGTTATCAAAATTTCATAAGGA
* * * * *
31623 GGTTATCAATATATCATATGG-AGGTTATCAACATCTCAT-AGTA
1 GGTTATCAAAATTTCATA-GGAAGGTTATCAAAATTTCATAAGGA
* * * *
31666 TTGGTTATCATAATTTCATTGGAAAGTTATCAAAATTTAAT-AGTGA
1 --GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAG-GA
* * * *
31712 GGTCT-TCAAAATTCCTTA-GAGAGGTTAACAAAATTTTTCATAAGAA
1 GGT-TATCAAAATTTCATAGGA-AGGTTATCAAAA--TTTCATAAGGA
31758 GGTTA
1 GGTTA
31763 AGAAAAATTT
Statistics
Matches: 826, Mismatches: 230, Indels: 236
0.64 0.18 0.18
Matches are distributed among these distances:
33 2 0.00
34 32 0.04
35 1 0.00
36 11 0.01
37 1 0.00
38 27 0.03
39 25 0.03
40 17 0.02
41 8 0.01
42 43 0.05
43 41 0.05
44 364 0.44
45 124 0.15
46 74 0.09
47 15 0.02
48 30 0.04
49 3 0.00
50 7 0.01
51 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (44 bp):
GGTTATCAAAATTTCATAGGAAGGTTATCAAAATTTCATAAGGA
Found at i:30939 original size:22 final size:22
Alignment explanation
Indices: 30813--31196 Score: 122
Period size: 22 Copynumber: 17.3 Consensus size: 22
30803 TATATATAAG
* * *
30813 AATTTCATAGTGTGGTGAACAA
1 AATTTCATAGTGAGGTTATCAA
30835 AATTTCATAAG-GAGGTTA-CTAA
1 AATTTCAT-AGTGAGGTTATC-AA
* * * *
30857 TATTTTATGGGGAGGTTATCAA
1 AATTTCATAGTGAGGTTATCAA
*
30879 AATTTCATAGTGTGGTTATCAA
1 AATTTCATAGTGAGGTTATCAA
** * *
30901 AATTTTTTATTGTGGTTATCAA
1 AATTTCATAGTGAGGTTATCAA
30923 AATTTCATA-TGAAGGTTAT-AA
1 AATTTCATAGTG-AGGTTATCAA
* * *
30944 AAGTCTCAATTTCA-TGAGGAGTACCAA
1 AA-TTTC-A--T-AGTGAGG-TTATCAA
* **
30971 AATTTGATA-AAAGGTTATC-A
1 AATTTCATAGTGAGGTTATCAA
* * * * *
30991 AATCTCATAGAGTGATTATCGA
1 AATTTCATAGTGAGGTTATCAA
* *
31013 AATTTCATAGAGATCGGATATCAA
1 AATTTCATAGTGA--GGTTATCAA
* * *
31037 AATTT-GTAG-GAAGATCATCAA
1 AATTTCATAGTG-AGGTTATCAA
* * ** *
31058 ATTTTAATAGTGTTGTTATAAA
1 AATTTCATAGTGAGGTTATCAA
* *
31080 AATTTCAAAGCGAGGTTATCAA
1 AATTTCATAGTGAGGTTATCAA
* * * *
31102 AATTACATAATGTA-ATTATCTA
1 AATTTCATAGTG-AGGTTATCAA
* * * *
31124 AATTTCATAGAGGGGTCAACAA
1 AATTTCATAGTGAGGTTATCAA
* * *
31146 AATTTTATAGAGAGGTTATTAA
1 AATTTCATAGTGAGGTTATCAA
* ** *
31168 AATTTCGTAAAGAGTTTATCAA
1 AATTTCATAGTGAGGTTATCAA
*
31190 ATTTTCA
1 AATTTCA
31197 AAATTTGATT
Statistics
Matches: 262, Mismatches: 79, Indels: 42
0.68 0.21 0.11
Matches are distributed among these distances:
20 8 0.03
21 28 0.11
22 188 0.72
23 11 0.04
24 11 0.04
25 5 0.02
26 7 0.03
27 4 0.02
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (22 bp):
AATTTCATAGTGAGGTTATCAA
Found at i:31350 original size:22 final size:22
Alignment explanation
Indices: 31237--31553 Score: 157
Period size: 22 Copynumber: 14.9 Consensus size: 22
31227 ATTTCTGGGG
*
31237 AGGTTATCAAAATTTCATAGTA
1 AGGTTATCAAAATTTCATAGGA
* *
31259 TGGTTA-CCAAA--T--TAGGA
1 AGGTTATCAAAATTTCATAGGA
* * *
31276 AGGTTATTAAACTTTTATTATGG-
1 AGGTTATCAAAATTTCA-TA-GGA
* *
31299 A-GTAATCAAAATTTC--AGGG
1 AGGTTATCAAAATTTCATAGGA
* *
31318 AGGATATCAAAATTTCATATGA
1 AGGTTATCAAAATTTCATAGGA
*
31340 AGGTTATCAAAATTTCATA-GT
1 AGGTTATCAAAATTTCATAGGA
* * *
31361 ATGTAGATCAAAATTTCATAGGG
1 AGGT-TATCAAAATTTCATAGGA
* * *
31384 AGATTAACAAAATTTCATAATG-
1 AGGTTATCAAAATTTCAT-AGGA
* * **
31406 ACGTTATAAAAAAATCATAGGA
1 AGGTTATCAAAATTTCATAGGA
* *
31428 AAGTTATCAAAA-TT--T--GT
1 AGGTTATCAAAATTTCATAGGA
*
31445 A-GTTATCAAGATTTCATAAGG-
1 AGGTTATCAAAATTTCAT-AGGA
* *
31466 AGGTTATCAAAATTTTATAGGG
1 AGGTTATCAAAATTTCATAGGA
*
31488 AGGTTTATCAAAATTTTATAGGA
1 AGG-TTATCAAAATTTCATAGGA
* * *
31511 TGGTTTATCAAAATTTCGTAGCA
1 AGG-TTATCAAAATTTCATAGGA
* *
31534 AGGTTATCACAATCTCATAG
1 AGGTTATCAAAATTTCATAG
31554 TGTGATCATC
Statistics
Matches: 223, Mismatches: 48, Indels: 48
0.70 0.15 0.15
Matches are distributed among these distances:
16 9 0.04
17 13 0.06
18 4 0.02
19 5 0.02
20 13 0.06
21 15 0.07
22 115 0.52
23 47 0.21
24 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (22 bp):
AGGTTATCAAAATTTCATAGGA
Found at i:31499 original size:23 final size:22
Alignment explanation
Indices: 31447--31526 Score: 108
Period size: 23 Copynumber: 3.5 Consensus size: 22
31437 AAATTTGTAG
* *
31447 TTATCAAGATTTCATAAGGAGG-
1 TTATCAAAATTTTAT-AGGAGGT
31469 TTATCAAAATTTTATAGGGAGGT
1 TTATCAAAATTTTATA-GGAGGT
31492 TTATCAAAATTTTATAGGATGGT
1 TTATCAAAATTTTATAGGA-GGT
31515 TTATCAAAATTT
1 TTATCAAAATTT
31527 CGTAGCAAGG
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
21 1 0.02
22 21 0.40
23 31 0.58
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.40
Consensus pattern (22 bp):
TTATCAAAATTTTATAGGAGGT
Found at i:37366 original size:6 final size:6
Alignment explanation
Indices: 37355--37455 Score: 109
Period size: 6 Copynumber: 16.8 Consensus size: 6
37345 TGGCCCGTCC
*
37355 ACAAAA ACAAAA ATC-AAA ACAAAA ACAAAA ACAAAA GCAAAA ACAAAA
1 ACAAAA ACAAAA A-CAAAA ACAAAA ACAAAA ACAAAA ACAAAA ACAAAA
* * * *
37403 AGAAAA ACAAAA AC-AAA ACTCAAA A-TAAA ACATAA ACAAAA ACAAAAA
1 ACAAAA ACAAAA ACAAAA AC-AAAA ACAAAA ACAAAA ACAAAA AC-AAAA
37451 ACAAA
1 ACAAA
37456 CTTTTTTCTT
Statistics
Matches: 81, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
5 10 0.12
6 60 0.74
7 11 0.14
ACGTcount: A:0.78, C:0.16, G:0.02, T:0.04
Consensus pattern (6 bp):
ACAAAA
Found at i:41187 original size:2 final size:2
Alignment explanation
Indices: 41180--41204 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
41170 ATGATTGTAA
41180 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
41205 CTAGTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:41295 original size:22 final size:22
Alignment explanation
Indices: 41263--41411 Score: 112
Period size: 22 Copynumber: 6.8 Consensus size: 22
41253 TGAATATTTT
*
41263 TATGAAATTTTGATACCTATC-C
1 TATGAAATTTTGATAACTA-CAC
* *
41285 TATTAAATTTTGATAATTACAC
1 TATGAAATTTTGATAACTACAC
*
41307 TATGAAATTTTGATAATTTAC-C
1 TATGAAATTTTGATAA-CTACAC
* *
41329 TATGAAATTGTGATAAACTCCA-
1 TATGAAATTTTGAT-AACTACAC
*
41351 TATGAAATGTTGATAACCTA-AC
1 TATGAAATTTTGATAA-CTACAC
* * *
41373 TATGAAATATTAATAAACCTTC-C
1 TATGAAATTTTGAT-AA-CTACAC
41396 TATGAAATTTTG-TAAC
1 TATGAAATTTTGATAAC
41412 CTTCCTATGA
Statistics
Matches: 104, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
20 1 0.01
21 6 0.06
22 75 0.72
23 22 0.21
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATAACTACAC
Found at i:41331 original size:44 final size:45
Alignment explanation
Indices: 41263--41421 Score: 143
Period size: 44 Copynumber: 3.6 Consensus size: 45
41253 TGAATATTTT
* * *
41263 TATGAAATTTTGAT-ACCTATCCTATTAAATTTTGAT-AATTACA
1 TATGAAATTTTGATAACCTATCCTATGAAATTGTGATAAACTACA
** *
41306 CTATGAAATTTTGATAATTTA-CCTATGAAATTGTGATAAACTCCA
1 -TATGAAATTTTGATAACCTATCCTATGAAATTGTGATAAACTACA
* * * * *
41351 TATGAAATGTTGATAACCTA-ACTATGAAATAT-TAATAAACCTTCC
1 TATGAAATTTTGATAACCTATCCTATGAAAT-TGTGATAAA-CTACA
41396 TATGAAATTTTG-TAACCT-TCCTATGA
1 TATGAAATTTTGATAACCTATCCTATGA
41422 TTTTTTATAA
Statistics
Matches: 95, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
44 72 0.76
45 23 0.24
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (45 bp):
TATGAAATTTTGATAACCTATCCTATGAAATTGTGATAAACTACA
Found at i:41398 original size:23 final size:21
Alignment explanation
Indices: 41327--41421 Score: 75
Period size: 22 Copynumber: 4.3 Consensus size: 21
41317 TGATAATTTA
* *
41327 CCTATGAAATTGTGATAAAC-T
1 CCTATGAAATT-TAATAACCTT
* *
41348 CCATATGAAATGTTGATAACCTA
1 CC-TATGAAAT-TTAATAACCTT
*
41371 ACTATGAAATATTAATAAACCTT
1 CCTATGAAAT-TTAAT-AACCTT
**
41394 CCTATGAAATTTTGTAACCTT
1 CCTATGAAATTTAATAACCTT
41415 CCTATGA
1 CCTATGA
41422 TTTTTTATAA
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
21 15 0.25
22 30 0.49
23 16 0.26
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.35
Consensus pattern (21 bp):
CCTATGAAATTTAATAACCTT
Found at i:41421 original size:66 final size:65
Alignment explanation
Indices: 41263--41421 Score: 155
Period size: 66 Copynumber: 2.4 Consensus size: 65
41253 TGAATATTTT
* * * * * *
41263 TATGAAATTTTG-ATACCTATCCTATTAAATTTTGATAATTACACTATGAAATTTTGATAATTTA
1 TATGAAATTTTGTA-ACCT-TCCTATGAAATGTTGATAACTACACTATGAAATATTAATAACTTA
41327 CC
64 CC
* *
41329 TATGAAATTGTGATAAAC-TCCATATGAAATGTTGATAACCTA-ACTATGAAATATTAATAAACC
1 TATGAAATTTTG-TAACCTTCC-TATGAAATGTTGATAA-CTACACTATGAAATATTAAT-AA-C
41392 TT-CC
61 TTACC
41396 TATGAAATTTTGTAACCTTCCTATGA
1 TATGAAATTTTGTAACCTTCCTATGA
41422 TTTTTTATAA
Statistics
Matches: 76, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
65 3 0.04
66 48 0.63
67 22 0.29
68 3 0.04
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (65 bp):
TATGAAATTTTGTAACCTTCCTATGAAATGTTGATAACTACACTATGAAATATTAATAACTTACC
Found at i:41446 original size:23 final size:22
Alignment explanation
Indices: 41420--41471 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
41410 ACCTTCCTAT
*
41420 GATTTTTTATAATCTCCCTGTAA
1 GATTTTTT-TAATCTCCCTATAA
* *
41443 GATTTTGTTAATTTCCCTATAA
1 GATTTTTTTAATCTCCCTATAA
41465 -ATTTTTT
1 GATTTTTT
41472 GATACTATAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 6 0.24
22 12 0.48
23 7 0.28
ACGTcount: A:0.25, C:0.13, G:0.08, T:0.54
Consensus pattern (22 bp):
GATTTTTTTAATCTCCCTATAA
Found at i:42287 original size:2 final size:2
Alignment explanation
Indices: 42280--42329 Score: 82
Period size: 2 Copynumber: 25.0 Consensus size: 2
42270 AGCCACATTT
* *
42280 TA TA TA TA TA TA TA TA TA TA TA TG TA TT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
42322 TA TA TA TA
1 TA TA TA TA
42330 CAGAGAGAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:42336 original size:2 final size:2
Alignment explanation
Indices: 42331--42355 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
42321 ATATATATAC
42331 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
42356 ACTACTCCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:43521 original size:28 final size:26
Alignment explanation
Indices: 43475--43537 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 26
43465 CTAAATTTCC
*
43475 ATTATTTTAATAATTCAATAATTA-AAAT
1 ATTA-TTTAATAATGCAAT--TTAGAAAT
43503 ATTATTTAATAATGGCAATTTAGAAAT
1 ATTATTTAATAAT-GCAATTTAGAAAT
43530 A-TATTTAA
1 ATTATTTAA
43538 AAAAAAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
26 10 0.31
27 14 0.44
28 8 0.25
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (26 bp):
ATTATTTAATAATGCAATTTAGAAAT
Found at i:45239 original size:1 final size:1
Alignment explanation
Indices: 45233--45260 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
45223 ACTTCGAAAG
45233 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
45261 CCCATATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:50820 original size:25 final size:25
Alignment explanation
Indices: 50791--50852 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
50781 TAATTTTCAA
50791 ATTTTTAAGAAAATAAAA-TTGGATT
1 ATTTTTAAGAAAA-AAAATTTGGATT
* ***
50816 TTTTTTTCCAAAAAAAATTTGGATT
1 ATTTTTAAGAAAAAAAATTTGGATT
50841 ATTTTTAAGAAA
1 ATTTTTAAGAAA
50853 CATGTAGTTT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
24 4 0.14
25 24 0.86
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.44
Consensus pattern (25 bp):
ATTTTTAAGAAAAAAAATTTGGATT
Found at i:51111 original size:2 final size:2
Alignment explanation
Indices: 51104--51134 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
51094 TATTCACATC
51104 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51135 AGTAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.