Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021778.1 Corchorus olitorius cultivar O-4 contig21811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48295

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--41
2
20.5
2
100
0
82
48
0
0
51
1.00
18881--18912
6
5.3
6
92
0
55
34
50
0
15
1.45
29214--29283
35
2.0
35
100
0
140
31
14
34
20
1.92
34703--34816
58
2.0
57
86
5
158
30
13
22
33
1.92
36079--36148
36
1.9
36
91
0
113
21
10
8
60
1.55
36659--37072
208
2.0
201
91
4
668
44
8
10
36
1.70
37143--37188
24
2.0
23
91
4
74
54
6
6
32
1.52
37179--37259
39
2.0
40
88
2
119
38
3
8
49
1.51
38211--39391
332
3.6
331
80
5
1307
36
17
14
31
1.89
39449--39514
27
2.4
27
85
7
89
48
3
6
42
1.43
39437--39614
94
1.9
97
91
3
299
53
4
7
34
1.49
43708--43748
6
6.8
6
100
0
82
51
17
17
14
1.77
46898--46947
21
2.4
21
89
0
73
38
14
28
20
1.91

Tables:   1

The End!