Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002178.1 Corchorus olitorius cultivar O-4 contig02178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 880

Length: 1468
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30


Found at i:857 original size:54 final size:54

Alignment explanation


    Indices: 793--899  Score: 205
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        783 TGTCGTCTGT

                                                      *           
        793 TTCTGTTGATGATCCAACCCCAAACCCTCTCAAGAAACCTCGGCTTGATCAGAA
          1 TTCTGTTGATGATCCAACCCCAAACCCTCTCAAGAAACCTCGACTTGATCAGAA

                                                                 
        847 TTCTGTTGATGATCCAACCCCAAACCCTCTCAAGAAACCTCGACTTGATCAGA
          1 TTCTGTTGATGATCCAACCCCAAACCCTCTCAAGAAACCTCGACTTGATCAGA

        900 CTATTGGTAA


Statistics
Matches: 52,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  54   52  1.00

ACGTcount: A:0.30, C:0.32, G:0.14, T:0.24


Consensus pattern (54 bp):   
TTCTGTTGATGATCCAACCCCAAACCCTCTCAAGAAACCTCGACTTGATCAGAA
Done.