Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021781.1 Corchorus olitorius cultivar O-4 contig21814, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49797

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
545--673
43
3.0
43
100
0
258
41
18
11
27
1.85
913--997
41
2.0
44
81
6
104
34
3
2
60
1.27
10904--11002
47
2.2
44
89
5
144
53
5
21
20
1.64
11445--11480
2
18.0
2
88
11
56
50
2
0
47
1.15
25542--26103
288
1.9
290
84
3
756
28
23
14
33
1.94
34579--34653
28
2.7
28
77
2
71
41
12
20
26
1.87
35224--35285
5
12.4
5
83
11
65
19
3
0
77
0.90
35238--35295
16
3.7
15
81
6
53
13
8
0
77
0.98
35272--35301
15
1.9
16
93
6
53
0
23
0
76
0.78
35353--35399
5
10.0
5
84
6
55
0
17
2
80
0.80
35354--35400
14
3.3
15
82
8
53
0
14
2
82
0.75
35354--35401
13
3.7
12
79
17
51
0
14
2
83
0.74
35859--35894
17
2.1
17
100
0
72
50
16
5
27
1.68
39600--39644
6
7.7
6
90
5
74
35
0
15
48
1.45
39874--39923
21
2.3
22
82
3
66
40
10
16
34
1.81
39882--39922
22
1.9
21
90
5
64
41
9
12
36
1.76
40211--40398
22
8.5
22
73
10
109
38
10
15
36
1.81
40225--40415
44
4.4
44
73
11
133
38
8
16
36
1.80
40226--40518
22
13.4
21
65
15
91
38
8
18
34
1.82
40539--40689
22
6.7
22
70
11
90
29
11
16
42
1.84
40602--40689
44
2.0
45
84
2
115
30
13
14
40
1.85
42960--43075
60
1.9
61
89
1
180
51
15
14
18
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43158--43236
28
2.8
28
82
3
97
16
17
12
53
1.73
47345--48043
360
1.9
358
83
5
892
35
16
21
26
1.94
48072--48214
72
2.0
72
83
8
184
37
7
25
28
1.84

Tables:   1

The End!