Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002179.1 Corchorus olitorius cultivar O-4 contig02179, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.33


Found at i:212 original size:13 final size:11

Alignment explanation


    Indices: 94--207  Score: 67
    Period size: 11  Copynumber: 10.8  Consensus size: 11

         84 ATTATGCTAT

                   *   
         94 TATATATCAAA
          1 TATATATAAAA

                 *  ** 
        105 TATATTTATGA
          1 TATATATAAAA

                       
        116 TATATATAAAA
          1 TATATATAAAA

                    *  
        127 TATAT-T-TAA
          1 TATATATAAAA

                 *  ** 
        136 T-TATTTATGA
          1 TATATATAAAA

                       
        146 TATATATAAAA
          1 TATATATAAAA

              *  *     
        157 TACATGT-AAA
          1 TATATATAAAA

                      *
        167 -ATATATAAAT
          1 TATATATAAAA

                 *  ** 
        177 TATATTTATGA
          1 TATATATAAAA

                       
        188 TATATATAAAA
          1 TATATATAAAA

                     
        199 TATATATAA
          1 TATATATAA

        208 CAAATTTTTT


Statistics
Matches: 74,  Mismatches: 24, Indels: 10
        0.69            0.22        0.09

Matches are distributed among these distances:
   8    3  0.04
   9    8  0.11
  10    9  0.12
  11   54  0.73

ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44


Consensus pattern (11 bp):   
TATATATAAAA
Done.