Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01021796.1 Corchorus olitorius cultivar O-4 contig21829, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46773
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:296 original size:25 final size:24
Alignment explanation
Indices: 262--308 Score: 85
Period size: 25 Copynumber: 1.9 Consensus size: 24
252 ACGTTTGCAC
262 AAATACCTAAGAATTTGAATTAAAA
1 AAATACCTAAGAATTT-AATTAAAA
287 AAATACCTAAGAATTTAATTAA
1 AAATACCTAAGAATTTAATTAA
309 TGTAAGTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.30
Consensus pattern (24 bp):
AAATACCTAAGAATTTAATTAAAA
Found at i:353 original size:39 final size:40
Alignment explanation
Indices: 299--379 Score: 137
Period size: 39 Copynumber: 2.0 Consensus size: 40
289 ATACCTAAGA
*
299 ATTTAATTAATGTAAGTATTTCAGTTATTATA-GTATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
*
338 ATTTAATTAATGTAAGTATTTTAGTTATTATATATATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
378 AT
1 AT
380 AGGAATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 31 0.79
40 8 0.21
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.51
Consensus pattern (40 bp):
ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
Found at i:617 original size:15 final size:15
Alignment explanation
Indices: 597--641 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
587 TTTAGACTTG
597 TATAGTATATAGATA
1 TATAGTATATAGATA
612 TATAGTATATAG--A
1 TATAGTATATAGATA
625 TATAG-ATATAGATA
1 TATAGTATATAGATA
639 TAT
1 TAT
642 GATGGATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.21
13 6 0.21
14 4 0.14
15 12 0.43
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (15 bp):
TATAGTATATAGATA
Found at i:627 original size:6 final size:7
Alignment explanation
Indices: 597--640 Score: 58
Period size: 6 Copynumber: 6.6 Consensus size: 7
587 TTTAGACTTG
597 TATAGTA
1 TATAGTA
604 TATAGATA
1 TATAG-TA
612 TATAGTA
1 TATAGTA
619 TATAG-A
1 TATAGTA
625 TATAG-A
1 TATAGTA
631 TATAG-A
1 TATAGTA
637 TATA
1 TATA
641 TGATGGATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.47
7 12 0.33
8 7 0.19
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.39
Consensus pattern (7 bp):
TATAGTA
Found at i:4926 original size:6 final size:6
Alignment explanation
Indices: 4917--4946 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
4907 TTCGAGGTAG
4917 CCTGGT CCTGGT CCTGGT CCTGGT CCTGGT
1 CCTGGT CCTGGT CCTGGT CCTGGT CCTGGT
4947 GACTTGTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.33, G:0.33, T:0.33
Consensus pattern (6 bp):
CCTGGT
Found at i:8791 original size:6 final size:6
Alignment explanation
Indices: 8780--8804 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8770 CCTTCTCACT
8780 ATCTCC ATCTCC ATCTCC ATCTCC A
1 ATCTCC ATCTCC ATCTCC ATCTCC A
8805 ATATCTGATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.48, G:0.00, T:0.32
Consensus pattern (6 bp):
ATCTCC
Found at i:14458 original size:12 final size:12
Alignment explanation
Indices: 14417--14458 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
14407 ACCGTAGTTA
14417 TTTC-TTCTTTT
1 TTTCTTTCTTTT
*
14428 ATTTCTTT-TCTT
1 -TTTCTTTCTTTT
14440 TTTCTTTCTTTT
1 TTTCTTTCTTTT
14452 TTTCTTT
1 TTTCTTT
14459 TTCGTTTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 7 0.27
12 17 0.65
13 2 0.08
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTCTTTCTTTT
Found at i:14460 original size:24 final size:23
Alignment explanation
Indices: 14417--14466 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 23
14407 ACCGTAGTTA
*
14417 TTTCTTCTTTTATTTCTTTTCTT
1 TTTCTTCTTTTATTTCTTTTCGT
14440 TTTCTTTCTTTT-TTTCTTTTTCGT
1 TTTC-TTCTTTTATTTC-TTTTCGT
14464 TTT
1 TTT
14467 GTTTTGTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
24 16 0.67
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTCTTCTTTTATTTCTTTTCGT
Found at i:14471 original size:18 final size:18
Alignment explanation
Indices: 14433--14471 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14423 CTTTTATTTC
*
14433 TTTTCTTTTTCTTTCTTT
1 TTTTCTTTTTCTTTCTGT
14451 TTTTCTTTTTCGTTT-TGT
1 TTTTCTTTTTC-TTTCTGT
14469 TTT
1 TTT
14472 GTAATTGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (18 bp):
TTTTCTTTTTCTTTCTGT
Found at i:17563 original size:22 final size:22
Alignment explanation
Indices: 17529--17630 Score: 109
Period size: 22 Copynumber: 4.6 Consensus size: 22
17519 AAATTCATGA
17529 GGAGGTTATCAAAATTCCATAT
1 GGAGGTTATCAAAATTCCATAT
* * * *
17551 TGTGGTTACCAAAATTTCATAT
1 GGAGGTTATCAAAATTCCATAT
*
17573 GGAAGTTATCAAAATTCCATA-
1 GGAGGTTATCAAAATTCCATAT
*
17594 GGAAGGTTATCAAAATTTCATA-
1 GG-AGGTTATCAAAATTCCATAT
*
17616 GTGTGGTTATCAAAA
1 G-GAGGTTATCAAAA
17631 CTTAATAGGA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
21 2 0.03
22 63 0.95
23 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (22 bp):
GGAGGTTATCAAAATTCCATAT
Found at i:17570 original size:44 final size:43
Alignment explanation
Indices: 17522--17630 Score: 130
Period size: 44 Copynumber: 2.5 Consensus size: 43
17512 GCATTATAAA
* *
17522 TTCATGAGGAGGTTATCAAAATTCCATATTG-TGGTTACCAAAAT
1 TTCAT-AGGAGGTTATCAAAATTCCATA-GGAAGGTTACCAAAAT
* *
17566 TTCATATGGAAGTTATCAAAATTCCATAGGAAGGTTATCAAAAT
1 TTCATA-GGAGGTTATCAAAATTCCATAGGAAGGTTACCAAAAT
*
17610 TTCATAGTGTGGTTATCAAAA
1 TTCATAG-GAGGTTATCAAAA
17631 CTTAATAGGA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
43 3 0.05
44 53 0.95
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (43 bp):
TTCATAGGAGGTTATCAAAATTCCATAGGAAGGTTACCAAAAT
Found at i:17639 original size:44 final size:43
Alignment explanation
Indices: 17554--17640 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 43
17544 TCCATATTGT
*
17554 GGTTACCAAAATTTCATATGGAAGTTATCAAAATTCCATAGGAA
1 GGTTACCAAAATTTCATATGG-AGTTATCAAAATTCAATAGGAA
*
17598 GGTTATCAAAATTTCATAGTGTG-GTTATCAAAACTT-AATAGGA
1 GGTTACCAAAATTTCATA-TG-GAGTTATCAAAA-TTCAATAGGA
17641 TCAGCTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 33 0.87
45 4 0.11
46 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.32
Consensus pattern (43 bp):
GGTTACCAAAATTTCATATGGAGTTATCAAAATTCAATAGGAA
Found at i:17685 original size:22 final size:21
Alignment explanation
Indices: 17646--17715 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 21
17636 TAGGATCAGC
*
17646 TTATTAAAATTTATTAGGAAGG
1 TTATTAAATTTTA-TAGGAAGG
**
17668 TTATTGAAATTTTATAGGGTGG
1 TTATT-AAATTTTATAGGAAGG
* *
17690 TTATCACAATTTTATAGAAAGG
1 TTATTA-AATTTTATAGGAAGG
17712 TTAT
1 TTAT
17716 CAAAGAGATT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 31 0.79
23 7 0.18
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.43
Consensus pattern (21 bp):
TTATTAAATTTTATAGGAAGG
Found at i:17749 original size:22 final size:21
Alignment explanation
Indices: 17724--17881 Score: 113
Period size: 22 Copynumber: 7.2 Consensus size: 21
17714 ATCAAAGAGA
*
17724 TTATCAAAATGTCATAGCGAGG
1 TTATCAAAATTTCATAG-GAGG
* *
17746 TTAT-ATGAATTTCATAGTGTGG
1 TTATCA-AAATTTCATAG-GAGG
* *
17768 TTAACAAAATTCCATAAGGAGG
1 TTATCAAAATTTCAT-AGGAGG
* *
17790 TTA-CTAATATTTCATGGAGAGG
1 TTATC-AAAATTTCATAG-GAGG
*
17812 TTATCAAAATTTCATAGTATGG
1 TTATCAAAATTTCATAGGA-GG
** *
17834 TTATCAAAATTTTTTAGTGTGG
1 TTATCAAAATTTCATAG-GAGG
*
17856 TTATCAAAATTTCATATGAAGG
1 TTATCAAAATTTCATA-GGAGG
17878 TTAT
1 TTAT
17882 ATATAAAAGT
Statistics
Matches: 105, Mismatches: 22, Indels: 18
0.72 0.15 0.12
Matches are distributed among these distances:
21 4 0.04
22 96 0.91
23 5 0.05
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (21 bp):
TTATCAAAATTTCATAGGAGG
Found at i:17790 original size:44 final size:42
Alignment explanation
Indices: 17724--17882 Score: 133
Period size: 44 Copynumber: 3.6 Consensus size: 42
17714 ATCAAAGAGA
*
17724 TTATCAAAATGTCAT-AGCGAGGTTATATGAATTTCATAGTGTGG
1 TTATCAAAATTTCATAAG-GAGGTTATA--AATTTCATAGTGTGG
* * * * *
17768 TTAACAAAATTCCATAAGGAGGTTACTAATATTTCATGGAGAGG
1 TTATCAAAATTTCATAAGGAGGTTA-TAA-ATTTCATAGTGTGG
* **
17812 TTATCAAAATTTCAT-AGTATGGTTATCAAAATTTTTTAGTGTGG
1 TTATCAAAATTTCATAAGGA-GGTTAT--AAATTTCATAGTGTGG
* *
17856 TTATCAAAATTTCATATGAAGGTTATA
1 TTATCAAAATTTCATAAGGAGGTTATA
17883 TATAAAAGTC
Statistics
Matches: 92, Mismatches: 16, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
44 78 0.85
45 8 0.09
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (42 bp):
TTATCAAAATTTCATAAGGAGGTTATAAATTTCATAGTGTGG
Found at i:17868 original size:66 final size:66
Alignment explanation
Indices: 17724--17884 Score: 159
Period size: 66 Copynumber: 2.4 Consensus size: 66
17714 ATCAAAGAGA
* * * *
17724 TTATCAAAATGTCATAGCGAGGTTATATGAATTTCATAGTGTGGTTAACAAAATTCCATAAGGAG
1 TTATCAAAATTTCATAGAGAGGTTATATAAATTTCATAGTATGGTTAACAAAATTCCATAAGGAG
17789 G
66 G
* * * ** *
17790 TTA-CTAATATTTCATGGAGAGGTTATCA-AAATTTCATAGTATGGTTATCAAAATT-TTTTAGT
1 TTATC-AAAATTTCATAGAGAGGTTAT-ATAAATTTCATAGTATGGTTAACAAAATTCCATAAG-
*
17852 GTGG
63 GAGG
17856 TTATCAAAATTTCATATGA-AGGTTATATA
1 TTATCAAAATTTCATA-GAGAGGTTATATA
17885 TAAAAGTCTC
Statistics
Matches: 76, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
65 5 0.07
66 67 0.88
67 4 0.05
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (66 bp):
TTATCAAAATTTCATAGAGAGGTTATATAAATTTCATAGTATGGTTAACAAAATTCCATAAGGAG
G
Found at i:18020 original size:22 final size:22
Alignment explanation
Indices: 17974--18144 Score: 86
Period size: 22 Copynumber: 7.8 Consensus size: 22
17964 TGAGATCGGA
* *
17974 TTATCAAAATTT-ATAGGAAG-A
1 TTATCAAAATTTCATA-GTAGTG
17995 TTATCAAAATTTCATAGTAGTG
1 TTATCAAAATTTCATAGTAGTG
* **
18017 TTATCAAAATTTCAAAACAAG-G
1 TTATCAAAATTTC-ATAGTAGTG
* *
18039 TTATCAAAATTACATAAT-GTG
1 TTATCAAAATTTCATAGTAGTG
* *
18060 ATTATCAAAATGTCATAG-AGGGG
1 -TTATCAAAATTTCATAGTA-GTG
* * *
18083 TCAACAAAATTTTATAG-AGTGG
1 TTATCAAAATTTCATAGTAGT-G
* * *
18105 TTATCAAATTTTCAAAAT-GTG
1 TTATCAAAATTTCATAGTAGTG
* *
18126 ATTAACAAGATTTCATAGT
1 -TTATCAAAATTTCATAGT
18145 GGTATTTTTG
Statistics
Matches: 111, Mismatches: 29, Indels: 19
0.70 0.18 0.12
Matches are distributed among these distances:
20 1 0.01
21 20 0.18
22 84 0.76
23 6 0.05
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTAGTG
Found at i:18065 original size:44 final size:44
Alignment explanation
Indices: 17972--18070 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 44
17962 ATTGAGATCG
* ** * *
17972 GATTATCAAAATTTATAGGAAGATTATCAAAATTTCATAGTAGT
1 GATTATCAAAATTTAAAACAAGATTATCAAAATTACATAATAGT
*
18016 G-TTATCAAAATTTCAAAACAAGGTTATCAAAATTACATAAT-GT
1 GATTATCAAAATTT-AAAACAAGATTATCAAAATTACATAATAGT
18059 GATTATCAAAAT
1 GATTATCAAAAT
18071 GTCATAGAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 15 0.32
44 32 0.68
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.34
Consensus pattern (44 bp):
GATTATCAAAATTTAAAACAAGATTATCAAAATTACATAATAGT
Found at i:18358 original size:44 final size:44
Alignment explanation
Indices: 18224--18560 Score: 145
Period size: 44 Copynumber: 7.8 Consensus size: 44
18214 TTATGGAGTA
*
18224 ATCAAAATTTC--AGGGAGGA-TATCAAAATTTCAT-ATGAACGTT
1 ATCAAAATTTCATAGGGA-GATTATCAAAATTTCATAATG-AGGTT
** * * * * *
18266 ATCAAAATTTCATAGTTTAG-TTTTCAAATTTTCATAGT-ATGTAG
1 ATCAAAATTTCATAG-GGAGATTATCAAAATTTCATAATGAGGT-T
*
18310 ATCAAAATTTCATAGGGAGATTAACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAGGGAGATTATCAAAATTTCATAATGAGGTT
*** * *
18354 ATCAAAAAAACATAGGGAGGTTATCAAAA-TT--T-GT-A-GTT
1 ATCAAAATTTCATAGGGAGATTATCAAAATTTCATAATGAGGTT
* * * * *
18392 ATCAAGATTTCATAAGGATG-GTATCAAAATTTCATAGTAAGGTCT
1 ATCAAAATTTCATAGGGA-GATTATCAAAATTTCATAATGAGGT-T
* * * *
18437 -TCAGAATTCCTTAGGGAGATTAACAAAATTTCATAA-GAAGGTT
1 ATCAAAATTTCATAGGGAGATTATCAAAATTTCATAATG-AGGTT
* * * * * * *
18480 AACAAAAATTT-ATAAAAGG-G-TTCTCGAAATTCCATAGT-ATCGTT
1 ATC-AAAATTTCAT--AGGGAGATTATCAAAATTTCATAATGA-GGTT
* * *
18524 ATTAAAATTTCATAGGAAGGTTATCAAAATTTCATAA
1 ATCAAAATTTCATAGGGAGATTATCAAAATTTCATAA
18561 GAAAGTCATC
Statistics
Matches: 213, Mismatches: 55, Indels: 52
0.67 0.17 0.16
Matches are distributed among these distances:
38 24 0.11
39 4 0.02
40 1 0.00
41 2 0.01
42 15 0.07
43 19 0.09
44 133 0.62
45 12 0.06
46 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (44 bp):
ATCAAAATTTCATAGGGAGATTATCAAAATTTCATAATGAGGTT
Found at i:18359 original size:22 final size:22
Alignment explanation
Indices: 18238--18560 Score: 93
Period size: 22 Copynumber: 15.0 Consensus size: 22
18228 AAATTTCAGG
*
18238 GAGGATATCAAAATTTCAT-AT
1 GAGGTTATCAAAATTTCATAAT
* *
18259 GAACGTTATCAAAATTTCATAGTT
1 G-AGGTTATCAAAATTTCATA-AT
* * * *
18283 TA-GTTTTCAAATTTTCATAGT
1 GAGGTTATCAAAATTTCATAAT
* * **
18304 -ATGTAGATCAAAATTTCATAGG
1 GAGGT-TATCAAAATTTCATAAT
* *
18326 GAGATTAACAAAATTTCATAAT
1 GAGGTTATCAAAATTTCATAAT
*** **
18348 GAGGTTATCAAAAAAACATAGG
1 GAGGTTATCAAAATTTCATAAT
*
18370 GAGGTTATCAAAA-TT--T-GT
1 GAGGTTATCAAAATTTCATAAT
* *
18388 -A-GTTATCAAGATTTCATAAG
1 GAGGTTATCAAAATTTCATAAT
*
18408 GATGG-TATCAAAATTTCATAGT
1 GA-GGTTATCAAAATTTCATAAT
* * * * **
18430 AAGGTCT-TCAGAATTCCTTAGG
1 GAGGT-TATCAAAATTTCATAAT
* *
18452 GAGATTAACAAAATTTCATAA-
1 GAGGTTATCAAAATTTCATAAT
*
18473 GAAGGTTAACAAAAATTT-ATAA-
1 G-AGGTTATC-AAAATTTCATAAT
* * * * *
18495 AAGGGTTCTCGAAATTCCATAGT
1 GA-GGTTATCAAAATTTCATAAT
* * *
18518 -ATCGTTATTAAAATTTCAT-AG
1 GA-GGTTATCAAAATTTCATAAT
18539 GAAGGTTATCAAAATTTCATAA
1 G-AGGTTATCAAAATTTCATAA
18561 GAAAGTCATC
Statistics
Matches: 216, Mismatches: 62, Indels: 46
0.67 0.19 0.14
Matches are distributed among these distances:
16 9 0.04
17 3 0.01
18 1 0.00
19 2 0.01
20 1 0.00
21 15 0.07
22 170 0.79
23 14 0.06
24 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.34
Consensus pattern (22 bp):
GAGGTTATCAAAATTTCATAAT
Found at i:21663 original size:21 final size:21
Alignment explanation
Indices: 21637--21679 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
21627 AATTGATAAG
21637 CCATCAAATACCCATCACTCT
1 CCATCAAATACCCATCACTCT
21658 CCATCAAATACCCATCACTCT
1 CCATCAAATACCCATCACTCT
21679 C
1 C
21680 TAACTTGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.23
Consensus pattern (21 bp):
CCATCAAATACCCATCACTCT
Found at i:46245 original size:2 final size:2
Alignment explanation
Indices: 46191--46225 Score: 61
Period size: 2 Copynumber: 17.0 Consensus size: 2
46181 GTTTCAAATA
46191 AT AT AT AGT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT
46226 TGCCTTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Done.