Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021799.1 Corchorus olitorius cultivar O-4 contig21832, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63927

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5526--5758
107
2.2
105
85
1
304
30
15
19
34
1.93
10556--10580
13
1.9
13
100
0
50
20
0
0
80
0.72
12198--12298
31
3.3
31
76
5
107
33
10
22
32
1.89
13133--13189
30
1.9
30
88
0
87
31
22
8
36
1.85
20357--20392
18
2.0
18
100
0
72
44
5
16
33
1.71
26017--26113
27
3.6
27
75
5
97
17
16
25
40
1.90
32772--32871
49
2.0
49
100
0
200
32
18
16
34
1.92
35735--35775
21
1.9
22
85
5
57
46
29
14
9
1.77
37080--37124
20
2.2
21
88
4
65
28
17
13
40
1.88
38193--38239
17
2.6
19
77
19
55
19
8
14
57
1.63
38395--38429
16
2.2
16
89
0
52
5
17
17
60
1.55
38991--39439
223
2.0
224
94
2
787
33
10
22
33
1.88
39823--39853
13
2.3
14
94
5
55
22
6
19
51
1.69
40270--40338
29
2.3
29
82
5
84
28
11
18
40
1.86
40264--40338
31
2.5
31
80
4
91
28
10
20
41
1.85
40596--40620
12
2.1
12
100
0
50
24
24
16
36
1.94
40669--40750
41
2.0
41
92
0
137
24
6
30
39
1.79
51706--51939
114
2.0
117
92
2
393
38
20
13
28
1.90
54676--54700
12
2.1
12
100
0
50
8
32
16
44
1.76
63886--63927
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!