Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021801.1 Corchorus olitorius cultivar O-4 contig21834, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51668

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2627--2667
18
2.4
17
84
15
57
39
7
2
51
1.43
3568--3650
42
2.0
42
92
0
139
36
13
24
26
1.92
6247--6284
19
2.0
19
85
10
51
23
10
28
36
1.88
12626--12751
62
2.0
62
98
0
243
25
23
18
32
1.97
12784--12888
51
2.1
51
100
0
210
38
5
17
39
1.73
16228--16368
46
3.1
45
85
7
187
52
13
7
26
1.66
16258--16379
45
2.7
45
94
1
208
50
16
6
26
1.69
16458--16506
24
2.1
23
85
11
64
42
22
2
32
1.65
16675--16718
16
2.8
16
83
10
54
31
4
4
59
1.38
17264--17294
3
10.3
3
92
0
53
0
35
0
64
0.94
21134--21284
76
2.0
76
86
2
214
35
13
12
39
1.82
25026--25062
13
2.8
13
87
0
56
16
43
8
32
1.77
26310--26371
25
2.6
24
87
5
81
59
4
6
29
1.43
29861--29885
12
2.1
12
100
0
50
12
32
8
48
1.69
47298--47322
9
2.8
9
100
0
50
16
0
12
72
1.13
49526--49671
22
6.8
21
72
12
100
38
13
7
40
1.73
49530--49584
21
2.5
22
88
2
76
41
10
7
40
1.68

Tables:   1

The End!