Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021804.1 Corchorus olitorius cultivar O-4 contig21837, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23650

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3425--3566
69
2.1
69
97
1
268
47
12
6
33
1.67
8207--8265
29
2.0
29
96
0
109
35
0
15
49
1.45
19519--19797
46
6.0
46
84
5
382
19
16
7
56
1.63
19499--19787
93
3.1
93
98
0
562
20
15
7
56
1.63
19760--19831
18
3.9
19
80
5
85
12
13
8
65
1.47
19761--19834
37
2.0
37
97
0
139
13
14
8
63
1.51
19866--19902
18
2.1
18
100
0
74
27
21
0
51
1.48
19973--20100
49
2.6
49
100
0
256
29
17
25
28
1.97
20086--20134
25
2.0
25
91
0
80
26
22
30
20
1.98
20198--20238
20
2.0
20
100
0
82
29
9
24
36
1.87
20426--20478
26
2.0
27
96
3
99
35
26
15
22
1.93
20378--20622
91
2.7
90
94
1
436
33
21
21
23
1.98
20716--20748
16
2.1
16
94
0
57
45
9
27
18
1.79
22854--22916
30
2.1
30
87
0
90
31
14
4
49
1.64

Tables:   1

The End!