genome.fa.s21806.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021806.1 Corchorus olitorius cultivar O-4 contig21839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68672

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--27	1	27.0	1	100	0	54	0	0	0	100	0.00
7351--7383	15	2.3	15	89	5	50	45	0	3	51	1.16
7436--7600	86	1.9	88	91	3	271	34	9	14	41	1.77
11190--12173	397	2.5	397	91	2	1640	24	20	30	25	1.98
16072--16173	33	3.1	33	91	1	152	26	28	18	26	1.98
17456--17536	40	2.0	40	97	0	153	54	14	11	19	1.70
23360--23451	33	2.8	33	83	1	114	29	27	15	28	1.96
27407--27940	131	4.1	131	85	2	583	34	14	12	38	1.85
27425--27932	130	3.9	130	85	3	581	35	14	12	37	1.84
28427--28489	21	3.0	21	92	0	108	50	17	9	22	1.74
29684--29712	1	29.0	1	100	0	58	0	0	0	100	0.00
31400--31571	22	7.5	22	73	15	109	41	10	12	35	1.77
31469--31527	29	2.0	29	90	0	91	37	10	8	44	1.69
33807--33851	14	3.5	12	84	9	54	31	0	11	57	1.33
37906--37962	28	2.0	28	100	0	114	40	7	14	38	1.73
40275--40546	21	12.6	22	72	16	178	51	4	21	22	1.65
40377--40536	41	3.9	41	89	4	223	54	3	20	21	1.60
40435--40536	7	14.6	7	69	15	59	54	3	21	19	1.60
40622--40771	72	2.1	72	86	7	207	54	4	18	23	1.61
40601--40749	36	4.2	36	93	5	250	54	2	17	26	1.54
40788--40841	27	2.1	26	93	6	92	61	0	18	20	1.35
40963--41013	25	2.0	26	88	3	77	56	3	19	19	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44382--44712	39	8.4	39	91	0	500	34	17	16	31	1.93
53729--53848	38	3.3	37	76	14	133	37	18	15	28	1.92
53704--53841	73	1.9	74	86	7	201	38	18	15	28	1.91
53666--53833	38	4.6	35	76	14	153	38	19	15	26	1.91
58017--58079	16	3.9	16	75	8	56	69	1	12	15	1.26
60774--60875	51	2.0	51	98	0	195	30	13	16	39	1.88

Tables:   1

The End!