Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021809.1 Corchorus olitorius cultivar O-4 contig21842, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30000

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5229--5337
57
1.9
57
92
0
182
46
15
14
22
1.82
8934--9000
28
2.6
24
86
9
80
38
10
1
49
1.46
8951--9000
24
2.1
24
85
7
66
40
12
2
46
1.52
9917--10072
80
2.0
80
96
2
287
36
12
0
51
1.39
10970--11008
17
2.3
17
86
8
53
58
2
2
35
1.25
19066--19121
28
2.0
28
100
0
112
17
17
32
32
1.94
20542--20685
72
2.0
71
94
2
254
23
19
18
38
1.93
27512--27581
36
1.9
36
91
0
113
21
10
8
60
1.55
28069--28478
204
2.0
201
95
1
730
42
8
11
36
1.72
28552--28598
25
1.9
24
91
4
76
57
8
4
29
1.48
28589--28669
39
2.0
40
92
2
137
37
3
8
50
1.51
29966--29999
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!