Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021811.1 Corchorus olitorius cultivar O-4 contig21844, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74890

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
566--636
21
3.4
21
100
0
142
19
30
26
22
1.98
8416--8516
50
2.0
50
96
0
184
45
7
10
35
1.69
8840--8887
24
1.9
25
91
8
80
14
27
14
43
1.84
12508--12548
21
2.1
19
86
9
55
9
2
34
53
1.47
23683--23713
7
4.4
7
100
0
62
25
45
0
29
1.54
29009--29033
2
12.5
2
100
0
50
48
0
52
0
1.00
29743--29820
32
2.6
30
76
13
72
35
16
26
20
1.94
30766--30844
39
2.0
39
92
0
131
34
16
13
35
1.88
36114--36194
39
2.0
40
92
2
137
50
8
3
37
1.51
36185--36231
25
1.9
24
91
4
76
29
8
8
53
1.61
37034--37103
36
1.9
36
91
0
113
60
8
10
21
1.55
48140--48164
2
12.5
2
100
0
50
0
52
0
48
1.00
52274--52307
4
8.8
4
93
6
61
26
0
0
73
0.83
52274--52310
11
3.3
11
96
3
65
27
0
0
72
0.84
66942--66977
9
3.9
9
85
7
54
41
27
0
30
1.56
66943--66979
19
1.9
19
100
0
74
43
29
0
27
1.55
66972--67012
20
2.0
20
86
9
57
43
19
4
31
1.72
67770--67794
11
2.3
11
100
0
50
44
0
0
56
0.99
73875--73999
25
5.0
25
94
0
214
30
27
21
20
1.98

Tables:   1

The End!