Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021814.1 Corchorus olitorius cultivar O-4 contig21847, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44788

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6830--6859
15
2.0
15
100
0
60
26
20
0
53
1.46
10623--10673
26
2.0
26
88
0
75
47
5
17
29
1.71
17230--17271
11
3.7
11
87
3
57
0
2
14
83
0.75
17231--17271
17
2.4
17
91
0
64
0
2
14
82
0.76
20029--20061
6
5.5
6
100
0
66
54
45
0
0
0.99
21222--21261
21
1.9
21
89
0
62
55
0
30
15
1.41
35027--35066
2
20.0
2
90
10
64
47
0
2
50
1.14
39791--40161
22
16.9
21
70
15
123
35
14
10
40
1.80
40014--40161
22
6.7
22
79
10
151
36
18
9
35
1.83
39792--40377
44
13.5
42
68
15
180
35
15
10
38
1.81
40202--40324
22
5.5
22
72
16
65
37
15
8
38
1.79
40248--40376
22
5.9
21
75
10
91
36
17
10
34
1.85
40184--40375
66
2.9
66
82
5
199
38
17
10
34
1.84
40185--40402
66
3.3
66
80
5
190
37
18
9
34
1.83
40564--40602
20
2.0
20
85
10
53
64
2
5
28
1.28
41869--41908
19
2.1
19
100
0
80
50
5
15
30
1.65
42291--42361
35
2.0
35
97
0
133
28
40
5
25
1.78
43753--43905
22
7.0
21
74
8
126
34
11
18
35
1.87
43749--43923
66
2.6
66
83
7
201
34
11
17
36
1.86
43749--43966
66
3.3
66
80
5
199
33
11
17
37
1.85
43989--44150
22
7.4
21
74
10
103
34
8
18
38
1.80
44255--44408
22
7.0
22
71
9
89
39
8
15
36
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44328--44379
23
2.4
22
87
6
79
44
5
11
38
1.65
44421--44781
22
17.0
21
71
15
217
39
8
17
34
1.81

Tables:   1

The End!