Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021815.1 Corchorus olitorius cultivar O-4 contig21848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70664

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2277--2413
68
1.9
69
92
7
231
33
16
22
27
1.95
2642--2883
98
2.5
95
87
3
344
42
9
9
38
1.70
6971--7226
107
2.4
107
87
2
361
38
8
8
44
1.66
20516--20582
29
2.3
29
87
5
91
40
16
26
16
1.89
20528--20590
29
2.2
29
88
0
90
41
17
23
17
1.90
24382--24440
28
2.1
28
87
6
84
32
20
8
38
1.83
26468--26529
2
31.0
2
80
6
72
46
6
1
45
1.38
26688--26725
20
1.9
20
84
10
51
36
10
13
39
1.79
28514--28595
39
2.1
39
95
0
146
30
18
6
45
1.73
32530--32570
4
10.2
4
89
0
55
0
21
0
78
0.76
36727--36849
62
2.0
63
86
1
176
47
17
14
20
1.82
36730--36835
31
3.4
31
72
5
106
44
17
16
21
1.87
36953--37029
31
2.5
31
82
0
91
25
12
16
44
1.84
36994--37062
34
2.1
34
83
8
88
23
10
15
50
1.74
38402--38469
31
2.2
31
89
2
102
38
22
14
25
1.92
42108--42134
2
13.5
2
100
0
54
51
0
0
48
1.00
42116--42224
52
2.1
52
98
0
209
37
12
14
34
1.85
47843--47895
27
2.0
27
81
7
63
22
9
1
66
1.31
49396--49446
25
2.0
26
88
3
77
52
0
45
1
1.12
52387--52427
18
2.2
19
86
8
57
53
0
0
46
1.00
61271--61296
3
8.7
3
100
0
52
69
0
0
30
0.89
62141--62244
52
2.0
52
92
0
172
25
20
25
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63069--63210
71
2.0
71
98
1
277
35
11
11
41
1.77
63529--63582
28
1.9
28
96
0
99
27
12
7
51
1.66
65715--65791
29
2.6
30
85
6
111
31
25
11
31
1.92
65715--65835
31
4.0
30
75
9
102
28
23
13
34
1.92
65962--65994
12
2.8
12
90
9
50
66
27
0
6
1.15
66084--66160
29
2.5
31
83
6
104
29
12
27
29
1.94

Tables:   1

The End!