Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021816.1 Corchorus olitorius cultivar O-4 contig21849, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93230

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5372--5430
29
2.0
29
100
0
118
30
20
6
42
1.78
6070--6173
52
2.0
52
92
0
172
25
19
26
27
1.99
7415--7439
3
8.3
3
100
0
50
68
0
0
32
0.90
14430--14503
21
3.5
22
65
9
55
27
2
18
51
1.60
16518--16803
144
2.0
144
99
0
563
25
13
16
43
1.85
21030--21088
21
2.8
21
94
0
100
27
23
30
18
1.98
21167--21208
12
3.5
12
90
0
66
21
0
52
26
1.47
21167--21214
12
4.0
12
88
0
60
18
0
52
29
1.46
24213--24246
7
4.9
7
96
0
59
26
26
14
32
1.95
33849--33925
29
2.7
29
83
0
82
40
23
14
22
1.90
34539--34573
16
2.2
16
94
0
61
5
14
40
40
1.69
37028--37067
17
2.4
17
91
0
62
0
30
0
70
0.88
37021--37080
29
2.1
28
84
3
75
3
26
0
70
1.03
38119--38810
348
2.0
345
91
1
1134
23
15
16
44
1.86
40612--40665
27
2.0
27
100
0
108
51
3
7
37
1.48
41649--41699
26
2.0
26
88
0
75
31
5
21
41
1.77
42269--42328
28
2.2
29
79
11
72
25
26
15
33
1.95
42464--42488
5
5.0
5
100
0
50
20
0
0
80
0.72
42709--42763
13
4.4
13
76
15
53
32
1
5
60
1.30
48623--48663
16
2.6
16
88
0
64
36
39
17
7
1.77
49445--49491
13
3.8
12
78
13
51
40
0
4
55
1.19
49667--49735
32
2.2
32
81
5
77
42
31
10
15
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49722--49760
14
2.7
15
84
11
55
43
38
15
2
1.60
49960--50021
28
2.2
28
78
18
67
51
11
8
29
1.66
57355--57379
13
1.9
13
100
0
50
0
0
12
88
0.53
58672--58710
19
2.1
19
90
0
60
17
12
0
69
1.19
67817--67858
21
2.0
21
100
0
84
23
4
9
61
1.45
67804--67879
27
3.0
27
78
21
110
26
11
10
51
1.71

Tables:   1

The End!