Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021818.1 Corchorus olitorius cultivar O-4 contig21851, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10046

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3287--3416
22
5.9
22
76
7
111
40
13
16
30
1.86
3287--3411
44
2.8
44
86
0
160
40
13
13
32
1.84
3464--3513
22
2.2
23
89
10
77
40
2
24
34
1.66
3670--3745
22
3.5
21
78
7
71
31
11
18
38
1.87
3985--4088
49
2.1
51
91
5
169
43
15
17
24
1.87
5501--6061
22
25.4
22
67
13
179
37
11
14
35
1.83
5960--6084
44
2.8
43
77
9
128
31
14
17
36
1.90
7487--7523
19
1.9
19
100
0
74
45
16
0
37
1.47
8488--8720
118
2.0
118
95
0
421
35
22
8
33
1.84
9964--10034
22
3.2
21
75
15
72
39
9
16
33
1.82

Tables:   1

The End!