Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021822.1 Corchorus olitorius cultivar O-4 contig21855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5807

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3783--4157
30
12.2
30
83
7
386
48
17
13
19
1.80
3783--4088
60
5.1
59
90
3
434
49
18
13
18
1.79
3787--4088
89
3.4
90
90
3
448
49
18
13
18
1.79
4020--4168
68
2.2
67
79
7
156
45
20
14
19
1.85
4626--4696
36
2.1
32
82
10
79
47
14
14
23
1.80
4570--5192
35
18.0
35
77
8
508
40
19
21
17
1.91
4568--5190
71
9.0
71
76
8
561
40
19
22
17
1.91
4761--4817
25
2.3
25
84
6
80
36
24
24
14
1.92
4670--5192
131
3.9
131
77
9
392
39
20
22
16
1.92
4786--5163
106
3.6
105
85
4
480
39
20
22
16
1.92
5197--5312
30
3.8
30
85
6
153
50
20
11
17
1.76
5197--5313
61
1.9
60
87
1
171
50
20
11
17
1.76
5311--5384
30
2.5
30
80
4
87
47
13
16
22
1.81

Tables:   1

The End!