genome.fa.s21824.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021824.1 Corchorus olitorius cultivar O-4 contig21857, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83716

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6993--7028	19	1.9	18	88	5	54	41	8	22	27	1.82
12312--12348	18	2.1	18	89	0	56	45	5	10	37	1.62
23578--23613	19	1.9	18	88	5	54	33	22	2	41	1.68
24517--24553	18	2.1	18	89	0	56	37	10	5	45	1.62
29647--29683	18	2.0	19	94	5	67	64	10	13	10	1.49
34840--34881	20	2.1	20	100	0	84	57	4	9	28	1.51
39133--44367	942	5.6	941	91	1	8048	34	18	16	30	1.93
45075--45117	21	2.0	21	86	0	59	23	18	18	39	1.92
46105--46245	23	6.1	23	75	15	148	21	27	35	15	1.94
46105--46245	69	2.0	69	87	2	203	21	27	35	15	1.94
46114--46246	46	2.9	46	86	4	171	21	27	34	15	1.94
55662--55869	57	3.8	56	73	13	171	26	24	26	22	2.00
55720--55917	48	3.9	48	71	14	162	28	24	25	20	1.99
55663--55902	108	2.3	105	93	2	399	26	24	25	23	2.00
55663--55939	108	2.6	105	88	5	394	27	23	24	23	2.00
59560--59666	50	2.2	50	81	6	121	19	23	13	43	1.86
65501--65603	51	2.0	50	81	9	120	20	21	13	44	1.85
67625--67755	49	2.7	48	84	10	169	51	6	16	26	1.67
69031--69059	9	3.3	9	95	4	51	34	20	0	44	1.52
70369--70446	15	5.2	15	70	11	70	11	26	25	35	1.90
70372--70446	30	2.5	30	93	0	123	12	26	26	34	1.91
71674--71759	18	4.8	18	88	0	118	11	19	41	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72466--72594	49	2.7	49	83	7	156	52	4	17	25	1.63
73859--73887	9	3.3	9	95	4	51	34	20	0	44	1.52
74088--74120	2	16.5	2	93	0	57	48	0	0	51	1.00
74697--74725	2	14.5	2	100	0	58	51	0	0	48	1.00
76727--76839	21	5.4	21	91	2	158	28	18	26	26	1.98

Tables:   1

The End!