Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021825.1 Corchorus olitorius cultivar O-4 contig21858, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5673
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:1205 original size:21 final size:21

Alignment explanation


    Indices: 1163--1216  Score: 56
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       1153 GCTTGGAATA

                    *       **   
       1163 GTGATGGCACGGGCATGGCCG
          1 GTGATGGCTCGGGCATAACCG

                          *      
       1184 GTGATGGCTCGGGCTTAACCG
          1 GTGATGGCTCGGGCATAACCG

                         
       1205 GT-AGTGGCTCGG
          1 GTGA-TGGCTCGG

       1217 TGATGGCATG


Statistics
Matches: 28,  Mismatches: 4, Indels: 2
        0.82            0.12        0.06

Matches are distributed among these distances:
  20    1  0.04
  21   27  0.96

ACGTcount: A:0.13, C:0.22, G:0.44, T:0.20


Consensus pattern (21 bp):   
GTGATGGCTCGGGCATAACCG
Done.