Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021827.1 Corchorus olitorius cultivar O-4 contig21860, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22970
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:3138 original size:31 final size:31

Alignment explanation


    Indices: 3096--3157  Score: 106
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       3086 ATATTCAAAA

                  *                        
       3096 AATAAGGGTATAATAGACGATTCAAAAGTTT
          1 AATAAGAGTATAATAGACGATTCAAAAGTTT

                             *             
       3127 AATAAGAGTATAATAGATGATTCAAAAGTTT
          1 AATAAGAGTATAATAGACGATTCAAAAGTTT

       3158 TACAAAACTC


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  31   29  1.00

ACGTcount: A:0.47, C:0.05, G:0.18, T:0.31


Consensus pattern (31 bp):   
AATAAGAGTATAATAGACGATTCAAAAGTTT
Done.