Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021829.1 Corchorus olitorius cultivar O-4 contig21862, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51353

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1210--1246
15
2.5
15
90
0
56
18
27
13
40
1.88
1425--1488
27
2.5
26
85
7
78
26
26
9
37
1.87
2063--2206
49
3.0
46
84
8
182
52
5
15
26
1.64
3481--3509
9
3.3
9
95
4
51
34
20
0
44
1.52
4460--4624
81
2.0
81
97
0
312
32
20
16
30
1.95
5566--5600
5
6.8
5
90
6
52
82
0
14
2
0.77
5565--5601
16
2.3
16
95
0
65
83
0
13
2
0.74
9611--9636
9
2.9
9
100
0
52
57
7
0
34
1.27
15164--15266
52
2.0
52
88
0
152
41
18
19
20
1.90
19958--19991
16
2.1
16
100
0
68
20
20
11
47
1.81
34959--35395
216
2.0
217
93
1
752
45
17
14
22
1.84
38919--39062
72
2.0
73
93
1
245
45
29
6
18
1.74
40437--40483
20
2.3
20
79
17
53
59
8
8
23
1.54
47284--47363
40
2.0
40
97
0
151
33
20
6
40
1.77

Tables:   1

The End!