Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002183.1 Corchorus olitorius cultivar O-4 contig02183, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5658
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--44  Score: 88
    Period size: 2  Copynumber: 22.0  Consensus size: 2

                                                                          
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

              
         43 CT
          1 CT

         45 TGGGTGGGGG


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   42  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
CT

Found at i:5439 original size:6 final size:6

Alignment explanation


    Indices: 5428--5456  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       5418 ATTGGGTTAC

                                             
       5428 ACTAGA ACTAGA ACTAGA ACTAGA ACTAG
          1 ACTAGA ACTAGA ACTAGA ACTAGA ACTAG

       5457 TTTCACTGAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17


Consensus pattern (6 bp):   
ACTAGA

Done.