Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021831.1 Corchorus olitorius cultivar O-4 contig21864, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24121

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2145--2186
21
2.0
21
95
0
75
33
26
19
21
1.97
2697--2844
76
1.9
76
81
5
174
17
29
28
25
1.97
5893--5953
30
2.0
30
96
0
113
40
21
0
37
1.53
6984--7030
11
4.7
10
80
17
53
40
6
21
31
1.78
6995--7030
19
1.9
18
88
5
54
41
2
22
33
1.68
9091--9130
20
2.1
19
90
4
62
65
2
10
22
1.35
10933--10977
2
23.5
2
82
8
58
51
2
0
46
1.13
10931--10995
28
2.4
28
85
14
84
52
3
1
43
1.26
10935--10985
12
4.6
11
76
14
52
50
3
0
45
1.20
12260--12291
4
8.0
4
100
0
64
25
0
0
75
0.81
15554--15627
29
2.5
30
80
8
89
32
12
20
35
1.89
20489--20529
12
3.5
12
80
12
50
48
7
4
39
1.52
20483--20529
23
2.0
23
84
8
60
46
6
8
38
1.60
21285--21325
12
3.6
12
77
12
50
48
2
0
48
1.14

Tables:   1

The End!