Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021833.1 Corchorus olitorius cultivar O-4 contig21866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10144
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32


Found at i:9207 original size:54 final size:54

Alignment explanation


    Indices: 9122--9229  Score: 198
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       9112 GTCAGTATAG

                                                                  
       9122 ACCTATAGCGTCGAGGGATAATTTGACGGACAGTTTTCCGTTGCAATAGGTGAA
          1 ACCTATAGCGTCGAGGGATAATTTGACGGACAGTTTTCCGTTGCAATAGGTGAA

                                      *                     *     
       9176 ACCTATAGCGTCGAGGGATAATTTGATGGACAGTTTTCCGTTGCAATATGTGAA
          1 ACCTATAGCGTCGAGGGATAATTTGACGGACAGTTTTCCGTTGCAATAGGTGAA

       9230 TCATCCGTCT


Statistics
Matches: 52,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  54   52  1.00

ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30


Consensus pattern (54 bp):   
ACCTATAGCGTCGAGGGATAATTTGACGGACAGTTTTCCGTTGCAATAGGTGAA
Done.