Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021837.1 Corchorus olitorius cultivar O-4 contig21870, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1450
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28


Found at i:755 original size:15 final size:16

Alignment explanation


    Indices: 737--770  Score: 61
    Period size: 15  Copynumber: 2.2  Consensus size: 16

        727 TGACAGAGAG

                            
        737 CAATTAAAC-AGAAAA
          1 CAATTAAACTAGAAAA

                            
        752 CAATTAAACTAGAAAA
          1 CAATTAAACTAGAAAA

               
        768 CAA
          1 CAA

        771 AGCAAAGTAA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  15    9  0.50
  16    9  0.50

ACGTcount: A:0.65, C:0.15, G:0.06, T:0.15


Consensus pattern (16 bp):   
CAATTAAACTAGAAAA

Done.