Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021840.1 Corchorus olitorius cultivar O-4 contig21873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35476

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1236--1269
2
17.0
2
87
0
50
47
2
2
47
1.32
1904--1974
36
1.9
37
86
11
101
39
11
5
43
1.64
4049--4089
18
2.3
18
95
0
73
56
0
19
24
1.42
6259--6297
16
2.4
16
86
0
51
41
20
15
23
1.90
7192--7247
16
3.4
17
72
22
57
1
8
16
73
1.17
10218--10260
10
4.4
10
86
11
54
0
37
0
62
0.95
10221--10256
12
3.0
12
87
0
54
0
38
0
61
0.96
12899--12931
16
2.1
16
94
0
57
45
15
6
33
1.70
14956--15014
19
2.9
21
87
7
95
49
22
5
23
1.70
15610--15658
23
2.1
23
100
0
98
38
24
10
26
1.87
18063--18145
22
3.8
21
73
17
64
57
1
2
38
1.19
18065--18113
25
2.0
25
84
8
64
59
0
0
40
0.98
18373--18514
75
1.9
75
92
0
239
25
16
18
39
1.91
19158--19217
29
2.1
29
100
0
120
46
6
15
31
1.71
27744--27794
24
2.1
25
85
3
68
70
5
5
17
1.28
30640--30704
26
2.9
21
77
20
76
46
18
3
32
1.65
32069--32192
41
3.0
41
83
4
153
20
25
28
26
1.99
32160--32234
27
2.8
27
87
0
114
18
25
32
24
1.97

Tables:   1

The End!