Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021844.1 Corchorus olitorius cultivar O-4 contig21877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6780

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
528--601
36
2.0
37
89
2
114
28
13
14
43
1.84
539--613
36
2.1
36
82
2
87
33
17
14
34
1.90
570--802
52
4.4
53
84
8
273
30
19
12
38
1.88
570--802
103
2.2
106
85
9
300
30
19
12
38
1.88
3926--4068
76
1.9
73
83
8
180
39
10
17
32
1.84
4880--4940
17
3.6
17
86
6
88
75
11
0
13
1.05
4888--4967
9
8.9
9
77
9
65
72
15
0
12
1.12
4888--4979
5
19.6
5
75
18
56
71
15
0
13
1.14
4887--4979
22
4.4
22
70
17
65
72
15
0
12
1.13
4871--4980
31
3.5
33
74
18
101
73
13
0
12
1.10
6111--6451
79
4.3
79
93
0
549
28
21
14
35
1.93
6539--6780
50
4.8
50
97
0
457
29
27
13
29
1.94

Tables:   1

The End!