Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021846.1 Corchorus olitorius cultivar O-4 contig21879, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4018
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24


Found at i:1506 original size:64 final size:64

Alignment explanation


    Indices: 1405--1596  Score: 375
    Period size: 64  Copynumber: 3.0  Consensus size: 64

       1395 CTTATCAACA

                                                      *                     
       1405 GATAATCACATAGTTTTTTAAGATATTGAACATTGAGCAAAGCGATAGCCTAACCCACAAAACT
          1 GATAATCACATAGTTTTTTAAGATATTGAACATTGAGCAAAGAGATAGCCTAACCCACAAAACT

                                                                            
       1469 GATAATCACATAGTTTTTTAAGATATTGAACATTGAGCAAAGAGATAGCCTAACCCACAAAACT
          1 GATAATCACATAGTTTTTTAAGATATTGAACATTGAGCAAAGAGATAGCCTAACCCACAAAACT

                                                                            
       1533 GATAATCACATAGTTTTTTAAGATATTGAACATTGAGCAAAGAGATAGCCTAACCCACAAAACT
          1 GATAATCACATAGTTTTTTAAGATATTGAACATTGAGCAAAGAGATAGCCTAACCCACAAAACT

       1597 AATAGAGAAC


Statistics
Matches: 127,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  64  127  1.00

ACGTcount: A:0.42, C:0.18, G:0.14, T:0.27


Consensus pattern (64 bp):   
GATAATCACATAGTTTTTTAAGATATTGAACATTGAGCAAAGAGATAGCCTAACCCACAAAACT
Done.