Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021857.1 Corchorus olitorius cultivar O-4 contig21890, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32185

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1086--1116
11
2.8
11
100
0
62
19
9
19
51
1.74
12345--12592
125
2.0
125
99
0
487
24
18
9
46
1.79
16107--16173
33
2.0
34
97
2
127
28
8
20
41
1.83
18467--18575
45
2.4
45
80
7
123
41
17
13
27
1.87
20728--20777
21
2.4
21
83
6
57
56
4
0
40
1.18
21839--21877
17
2.2
18
86
4
53
48
7
41
2
1.45
22057--22361
99
3.1
99
85
6
436
36
9
16
37
1.81
22726--22770
9
5.4
9
77
20
53
15
35
8
40
1.79
22724--22771
16
3.0
16
96
0
87
14
37
10
37
1.81
22848--23007
84
1.9
84
84
0
212
36
17
22
23
1.94
23641--23907
50
5.3
50
91
0
426
37
11
26
24
1.89
24180--24273
27
3.5
27
86
0
125
15
20
27
36
1.93
30192--30232
20
2.0
21
95
4
75
19
26
14
39
1.90
30284--30319
16
2.2
16
90
0
54
75
0
2
22
0.94

Tables:   1

The End!