genome.fa.s21860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021860.1 Corchorus olitorius cultivar O-4 contig21893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56200

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5226--5288	26	2.4	26	83	0	72	3	31	0	65	1.09
6592--6668	29	2.6	30	89	4	113	29	18	10	41	1.83
7851--7884	12	2.8	12	86	13	52	82	5	8	2	0.93
10609--10662	19	2.6	21	77	19	60	38	18	3	38	1.69
19961--20009	21	2.4	21	80	10	57	69	4	6	20	1.27
21614--21715	53	1.9	53	83	0	132	29	17	6	46	1.74
23728--24506	389	2.0	390	97	0	1472	37	10	4	47	1.57
24198--24484	159	1.8	157	86	3	396	41	9	2	47	1.47
25292--25332	21	1.9	22	85	5	57	9	17	29	43	1.80
35212--35283	31	2.3	31	77	13	85	25	5	8	61	1.46
35718--35805	32	2.8	32	81	6	99	43	35	14	6	1.73
35717--35821	16	6.8	14	72	19	59	44	34	14	6	1.71
36862--36930	27	2.5	27	92	2	111	27	23	23	26	2.00
41159--41190	2	17.0	2	87	12	50	46	0	0	53	1.00
42810--42850	20	2.0	20	85	4	55	51	14	7	26	1.69
43578--43696	60	2.0	60	98	0	229	23	21	19	35	1.96
46695--46727	15	2.2	15	94	0	57	42	12	30	15	1.83
47853--48219	150	2.5	144	87	6	477	31	20	17	30	1.96
50931--50966	13	2.6	14	86	13	56	8	19	0	72	1.10
50938--50966	13	2.2	13	100	0	58	6	20	0	72	1.07
53679--53780	27	3.8	27	85	5	143	17	39	20	22	1.93
55825--55928	32	3.2	32	94	0	181	34	25	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55905--55952	24	2.0	24	95	0	87	39	29	22	8	1.83
55873--55986	56	2.0	56	87	0	165	36	25	18	19	1.94

Tables:   1

The End!