Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021863.1 Corchorus olitorius cultivar O-4 contig21896, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41131

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1091--1137
6
8.5
6
80
19
50
51
0
17
31
1.46
1094--1149
27
2.0
29
83
13
73
51
0
17
30
1.46
5549--5585
14
2.6
14
91
0
65
40
5
13
40
1.67
9275--9584
76
4.1
76
89
0
460
15
26
35
21
1.94
22175--22213
21
1.9
21
89
5
62
38
12
7
41
1.72
23092--23159
33
2.1
34
83
5
86
50
5
11
32
1.63
24038--24067
15
2.0
15
100
0
60
26
0
40
33
1.57
25690--25736
3
16.0
3
95
4
87
34
0
0
65
0.93
25915--25999
21
4.0
23
80
18
87
52
0
20
27
1.46
25938--25970
13
2.5
13
100
0
66
54
0
21
24
1.45
40696--40818
27
4.7
27
89
3
162
21
17
26
34
1.95

Tables:   1

The End!