Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021865.1 Corchorus olitorius cultivar O-4 contig21898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5031
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27


Found at i:2346 original size:15 final size:16

Alignment explanation


    Indices: 2316--2353  Score: 60
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       2306 TTACTTTGTT

                            
       2316 TTGTTTTCTAGTTTAA
          1 TTGTTTTCTAGTTTAA

                            
       2332 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTTTAA

            *      
       2347 CTGTTTT
          1 TTGTTTT

       2354 ATGTCAATCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  15   12  0.57
  16    9  0.43

ACGTcount: A:0.13, C:0.08, G:0.13, T:0.66


Consensus pattern (16 bp):   
TTGTTTTCTAGTTTAA
Done.