Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021867.1 Corchorus olitorius cultivar O-4 contig21900, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3335
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31


Found at i:1105 original size:25 final size:23

Alignment explanation


    Indices: 1071--1116  Score: 74
    Period size: 25  Copynumber: 1.9  Consensus size: 23

       1061 TTTTGGCTCT

                                     
       1071 TGAAAAACTTGATGGATGAGATGGA
          1 TGAAAAACTTGAT-GAT-AGATGGA

                                 
       1096 TGAAAAACTTGATGATAGATG
          1 TGAAAAACTTGATGATAGATG

       1117 AATAAAAGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  23    5  0.24
  24    3  0.14
  25   13  0.62

ACGTcount: A:0.41, C:0.04, G:0.28, T:0.26


Consensus pattern (23 bp):   
TGAAAAACTTGATGATAGATGGA

Found at i:2548 original size:21 final size:21

Alignment explanation


    Indices: 2522--2562  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2512 TTAAAAACCC

                                  
       2522 TAGTACCACTTAG-ATCCAATT
          1 TAGTACCACTT-GTATCCAATT

                                
       2543 TAGTACCACTTGTATCCAAT
          1 TAGTACCACTTGTATCCAAT

       2563 AGGGCTTCAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    1  0.05
  21   18  0.95

ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34


Consensus pattern (21 bp):   
TAGTACCACTTGTATCCAATT
Done.