Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021868.1 Corchorus olitorius cultivar O-4 contig21901, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16811
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:13261 original size:19 final size:18

Alignment explanation


    Indices: 13228--13263  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

      13218 TTGAGATAAT

                              
      13228 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
      13246 TCTTCAACTTATCTTCAA
          1 TCTTCAA-TGATCTTCAA

      13264 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.31, C:0.25, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA

Found at i:16348 original size:20 final size:20

Alignment explanation


    Indices: 16323--16367  Score: 90
    Period size: 20  Copynumber: 2.2  Consensus size: 20

      16313 GAGGCATAAT

                                
      16323 GGTAATATCGACAGATCGAG
          1 GGTAATATCGACAGATCGAG

                                
      16343 GGTAATATCGACAGATCGAG
          1 GGTAATATCGACAGATCGAG

                 
      16363 GGTAA
          1 GGTAA

      16368 CATAGTAATT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   25  1.00

ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20


Consensus pattern (20 bp):   
GGTAATATCGACAGATCGAG
Done.