Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002187.1 Corchorus olitorius cultivar O-4 contig02187, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1198
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33


Found at i:1029 original size:46 final size:45

Alignment explanation


    Indices: 977--1065  Score: 169
    Period size: 46  Copynumber: 2.0  Consensus size: 45

        967 ATAGAAAAAT

                                                          
        977 CCTAATCCAAATCTAATTAGGAATTGGGTCAAAAATCCTAACAAAG
          1 CCTAATCCAAATCTAATTAGGAATTGGGTC-AAAATCCTAACAAAG

                                                       
       1023 CCTAATCCAAATCTAATTAGGAATTGGGTCAAAATCCTAACAA
          1 CCTAATCCAAATCTAATTAGGAATTGGGTCAAAATCCTAACAA

       1066 GCATCTAAAT


Statistics
Matches: 43,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  45   13  0.30
  46   30  0.70

ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25


Consensus pattern (45 bp):   
CCTAATCCAAATCTAATTAGGAATTGGGTCAAAATCCTAACAAAG
Done.