Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021870.1 Corchorus olitorius cultivar O-4 contig21903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19313

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
805--845
19
2.2
19
86
8
57
4
17
0
78
0.93
812--850
20
1.9
19
90
10
60
2
20
0
76
0.90
791--864
31
2.4
30
82
13
80
5
18
0
75
0.99
836--860
11
2.3
11
100
0
50
0
24
0
76
0.80
940--1020
37
2.2
37
90
0
126
11
40
35
12
1.78
4751--4974
48
4.8
48
82
2
249
22
29
11
35
1.90
8406--9096
346
2.0
344
96
0
1265
20
15
22
41
1.90
11473--11529
24
2.3
25
79
8
64
24
17
5
52
1.65
13748--13778
12
2.7
12
95
5
55
19
29
29
22
1.98
13928--13972
22
2.2
20
88
8
63
26
15
4
53
1.61
13998--14061
23
2.8
23
80
2
67
39
15
12
32
1.85
13995--14073
23
3.5
22
75
6
61
37
15
13
32
1.87
14106--14379
22
12.8
22
73
14
198
36
17
8
37
1.81
14111--15132
44
23.9
42
67
17
340
36
17
8
37
1.81
14460--14903
22
20.0
22
66
15
146
34
15
9
40
1.80
14735--15132
66
6.2
65
71
16
249
37
18
8
36
1.80
14901--15133
22
10.5
22
74
9
186
38
17
8
35
1.81
15299--15337
20
2.0
20
85
10
53
64
2
5
28
1.28
17818--17886
20
3.3
20
76
8
66
49
11
17
21
1.78
17912--18014
43
2.4
44
81
4
120
37
8
11
41
1.73
17943--18010
22
3.1
22
82
2
84
39
4
11
44
1.61

Tables:   1

The End!