Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021871.1 Corchorus olitorius cultivar O-4 contig21904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78684

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
754--805
25
2.2
25
82
6
63
42
5
9
42
1.61
827--1089
130
2.0
130
88
5
388
49
2
10
37
1.51
1248--1378
65
2.0
65
98
0
253
25
4
23
45
1.72
1633--1681
21
2.3
21
89
0
71
46
2
14
36
1.56
1639--1673
15
2.2
16
95
5
63
51
0
11
37
1.38
3359--3394
18
1.9
19
88
5
56
2
11
8
77
1.08
4732--4768
18
2.1
18
89
0
56
21
8
40
29
1.82
4952--5036
40
2.1
39
82
6
107
17
14
16
51
1.76
4970--5048
40
2.0
40
97
0
149
18
15
12
53
1.73
8849--8880
15
2.3
15
89
10
50
6
6
0
87
0.67
9727--9778
25
2.1
25
96
0
95
48
15
21
15
1.81
14199--14235
17
2.2
17
90
0
56
27
21
16
35
1.94
16257--16323
30
2.2
30
89
0
98
25
31
19
23
1.98
18550--18628
28
3.0
26
76
10
88
34
6
18
40
1.76
18555--18628
26
2.8
25
80
10
85
36
5
17
40
1.73
18556--18644
26
3.4
26
78
4
81
32
5
15
46
1.70
21458--21494
18
2.1
18
89
0
56
45
5
10
37
1.62
30325--30358
10
3.3
10
84
8
50
88
8
2
0
0.62
45730--45950
120
1.8
120
93
1
381
20
32
16
30
1.95
53070--53109
15
2.6
16
88
4
55
15
10
12
62
1.54
56627--56656
10
3.0
10
100
0
60
10
50
30
10
1.69
60067--60106
15
2.6
16
88
4
55
15
10
12
62
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62264--62306
8
6.0
7
84
10
52
44
0
2
53
1.13
62272--62305
2
17.5
2
93
6
61
47
0
0
52
1.00
63119--63168
7
6.7
7
78
13
55
18
0
0
82
0.68
63122--63168
6
7.5
6
79
15
51
17
0
0
82
0.66
63115--63168
15
3.5
15
85
10
65
18
0
0
81
0.69
63110--63164
25
2.2
24
87
12
76
16
0
1
81
0.77
64505--64533
2
14.5
2
100
0
58
48
0
0
51
1.00
65931--66174
121
2.0
121
97
0
461
29
22
19
28
1.98
68561--68614
19
2.6
21
77
19
60
38
18
3
38
1.69

Tables:   1

The End!