Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021876.1 Corchorus olitorius cultivar O-4 contig21909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61193

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64--132
36
1.9
35
91
2
111
21
8
8
60
1.53
1280--1308
12
2.3
13
94
5
51
51
0
13
34
1.42
1350--1519
45
3.9
45
89
6
255
27
16
28
27
1.97
1444--1519
38
2.0
38
89
0
116
27
18
28
25
1.98
1946--1974
6
4.8
6
100
0
58
34
17
0
48
1.47
12864--12897
2
17.0
2
100
0
68
0
50
0
50
1.00
28949--28973
13
1.9
13
100
0
50
44
0
0
56
0.99
29531--29587
30
1.9
30
88
0
87
31
21
10
36
1.87
42262--42556
106
2.8
104
84
8
384
38
8
8
44
1.65
42262--42598
106
3.2
104
80
12
350
38
9
7
44
1.64
42831--43904
431
2.5
437
83
4
1290
43
12
13
30
1.81
44906--45027
33
3.7
33
85
2
129
14
36
32
15
1.88
45926--45961
2
19.0
2
88
11
58
47
0
0
52
1.00
47359--47471
42
2.7
42
88
4
174
20
46
15
17
1.83
53758--53851
45
2.2
43
85
11
122
37
21
6
35
1.79
55042--55083
16
2.7
16
78
14
52
7
23
33
35
1.82
55099--55154
28
2.0
28
85
0
76
3
21
37
37
1.71
55431--55463
17
1.9
17
88
11
50
63
0
0
36
0.95
55918--56011
45
2.2
43
86
7
129
37
21
6
35
1.79
57507--57535
2
14.5
2
100
0
58
51
0
0
48
1.00
58532--58584
16
3.3
15
82
10
61
50
24
13
11
1.73
58772--58883
32
3.5
32
85
1
143
37
34
9
17
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58781--58883
16
6.4
16
67
11
59
36
33
10
18
1.85
58834--58885
16
3.2
16
78
10
70
36
36
9
17
1.82
60875--60900
7
3.7
7
100
0
52
11
0
0
88
0.52

Tables:   1

The End!