Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021878.1 Corchorus olitorius cultivar O-4 contig21911, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 884

Length: 1474
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37


Found at i:1231 original size:49 final size:47

Alignment explanation


    Indices: 1156--1295  Score: 169
    Period size: 49  Copynumber: 2.9  Consensus size: 47

       1146 CAAGCAACCC

                *                                           
       1156 TTTACTTTTAC-TGCACTTTTTCTCAATTTTTACTACAAAATTGAACT
          1 TTTAATTTTACTTGCACTTTTTCTCAATTTTTA-TACAAAATTGAACT

                                               *          *  
       1203 TTTAATTTTACTTGCATCTTTTTCTCAATTTTTAAGACAAAATTGATCT
          1 TTTAATTTTACTTGCA-CTTTTTCTCAATTTTT-ATACAAAATTGAACT

                         *         *                      
       1252 TTTAATTTT-CATCGCACTTTTTATCAATTTTT-TGACAAAATTGA
          1 TTTAATTTTAC-TTGCACTTTTTCTCAATTTTTAT-ACAAAATTGA

       1296 TTGGCACGCT


Statistics
Matches: 82,  Mismatches: 6, Indels: 10
        0.84            0.06        0.10

Matches are distributed among these distances:
  47   20  0.24
  48   20  0.24
  49   41  0.50
  50    1  0.01

ACGTcount: A:0.29, C:0.16, G:0.06, T:0.50


Consensus pattern (47 bp):   
TTTAATTTTACTTGCACTTTTTCTCAATTTTTATACAAAATTGAACT
Done.