Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021881.1 Corchorus olitorius cultivar O-4 contig21914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56576

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5228--5265
9
4.3
9
90
3
60
47
0
18
34
1.49
6541--6680
49
2.9
47
81
10
160
28
16
5
49
1.68
7699--7742
23
1.9
23
81
9
54
15
36
2
45
1.59
11590--11642
17
3.1
17
86
2
70
47
1
5
45
1.37
14177--14201
12
2.1
12
100
0
50
40
8
36
16
1.77
16070--16356
41
6.8
43
81
7
336
40
28
10
21
1.86
16070--16360
84
3.4
84
92
1
458
39
28
10
21
1.86
21297--21346
26
1.9
26
87
0
73
14
20
12
54
1.71
28068--28119
22
2.4
22
90
6
79
38
9
9
42
1.70
35245--35297
17
3.1
17
83
2
61
47
5
3
43
1.45
36483--36522
21
2.0
21
85
5
55
12
32
15
40
1.84
41546--41592
26
1.9
24
87
12
69
40
4
25
29
1.75
45947--45979
15
2.2
15
94
0
57
21
9
30
39
1.84
50392--50483
22
4.2
22
84
4
123
39
11
26
22
1.89
52164--52199
18
2.1
18
89
5
56
44
5
11
38
1.63
52994--53025
11
2.8
12
86
13
50
37
6
18
37
1.76
53006--53041
19
1.9
18
88
5
54
41
5
22
30
1.76

Tables:   1

The End!