Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021884.1 Corchorus olitorius cultivar O-4 contig21917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20441

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3392--3433
21
2.0
21
95
4
77
19
14
21
45
1.85
3413--3773
35
10.4
36
75
12
335
18
19
17
44
1.87
3413--3773
71
5.2
71
79
9
379
18
19
17
44
1.87
3564--3690
62
2.1
61
91
4
202
18
19
18
44
1.88
3597--3655
26
2.3
26
90
0
91
16
20
18
44
1.87
3511--3761
133
1.9
132
88
4
380
18
19
17
43
1.88
4037--4748
30
23.6
29
86
6
662
22
14
16
46
1.83
4036--4832
91
8.9
90
82
7
769
22
15
16
45
1.84
4037--4839
121
6.7
119
83
6
842
22
14
16
45
1.84
4361--4832
30
15.8
29
79
11
140
21
14
18
45
1.85
5302--5353
27
1.9
27
100
0
104
17
15
23
44
1.86
5302--5360
27
2.2
27
93
3
102
20
16
20
42
1.89
9286--9523
123
1.9
124
96
0
442
34
18
16
31
1.93
11066--11118
22
2.4
22
81
6
63
62
11
7
18
1.52
18133--18207
36
2.1
37
92
2
125
20
14
13
52
1.75

Tables:   1

The End!