Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021885.1 Corchorus olitorius cultivar O-4 contig21918, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3208
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33


Found at i:1429 original size:14 final size:14

Alignment explanation


    Indices: 1410--1440  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

       1400 AATAAAATGG

                          
       1410 TTGTTTTGTTTGGT
          1 TTGTTTTGTTTGGT

                        * 
       1424 TTGTTTTGTTTGTT
          1 TTGTTTTGTTTGGT

               
       1438 TTG
          1 TTG

       1441 ATGCTCTTGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.00, C:0.00, G:0.26, T:0.74


Consensus pattern (14 bp):   
TTGTTTTGTTTGGT

Found at i:2916 original size:18 final size:19

Alignment explanation


    Indices: 2888--2924  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

       2878 ACGCCATTAG

                               
       2888 GACATTTCTATTATCCCAC
          1 GACATTTCTATTATCCCAC

                          *    
       2907 GACA-TTCTATTATGCCAC
          1 GACATTTCTATTATCCCAC

       2925 AGCTCGAGGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18   13  0.76
  19    4  0.24

ACGTcount: A:0.27, C:0.30, G:0.08, T:0.35


Consensus pattern (19 bp):   
GACATTTCTATTATCCCAC
Done.