Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021887.1 Corchorus olitorius cultivar O-4 contig21920, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7252
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30


Found at i:7117 original size:12 final size:12

Alignment explanation


    Indices: 7100--7129  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       7090 ACCAACAAAG

                        
       7100 GCCCAAAAGCAA
          1 GCCCAAAAGCAA

                        
       7112 GCCCAAAAGCAA
          1 GCCCAAAAGCAA

             *    
       7124 GTCCAA
          1 GCCCAA

       7130 GTACAAAATG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.47, C:0.33, G:0.17, T:0.03


Consensus pattern (12 bp):   
GCCCAAAAGCAA
Done.