Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021891.1 Corchorus olitorius cultivar O-4 contig21924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4014
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:2684 original size:18 final size:19

Alignment explanation


    Indices: 2661--2698  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       2651 GTGCATGGGT

                      *        
       2661 TGCATGGAG-GCATGGAGA
          1 TGCATGGAGACCATGGAGA

                               
       2679 TGCATGGAGACCATGGAGA
          1 TGCATGGAGACCATGGAGA

             
       2698 T
          1 T

       2699 AACGATGGAC


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    9  0.50
  19    9  0.50

ACGTcount: A:0.29, C:0.13, G:0.39, T:0.18


Consensus pattern (19 bp):   
TGCATGGAGACCATGGAGA

Done.