Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021892.1 Corchorus olitorius cultivar O-4 contig21925, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5914
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:4246 original size:76 final size:76

Alignment explanation


    Indices: 4096--4247  Score: 173
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       4086 ACAAGGACCC

                                           **                              * 
       4096 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCACATGGTTGCCTAAAGCACCCATGTGGTTTGCTTGAGAACCCAGAT

             *         
       4161 GGGCAGTGTCA
         66 GAGCAGTGTCA

                  * *     *              *                           **      
       4172 CGACTCTAGCTGGGTGCCCACATGGTTTGTCTAAAG-ACCCATGT-GTTTCGCTTGATCACCCAG
          1 CGACTCCACCTGGGCGCCCACATGG-TTGCCTAAAGCACCCATGTGGTTT-GCTTGAGAACCCAG

                  *      
       4235 ATGAGCTGTGTCA
         64 ATGAGCAGTGTCA

       4248 TAGCTCATCA


Statistics
Matches: 63,  Mismatches: 11, Indels: 4
        0.81            0.14        0.05

Matches are distributed among these distances:
  75    4  0.06
  76   52  0.83
  77    7  0.11

ACGTcount: A:0.18, C:0.28, G:0.28, T:0.26


Consensus pattern (76 bp):   
CGACTCCACCTGGGCGCCCACATGGTTGCCTAAAGCACCCATGTGGTTTGCTTGAGAACCCAGAT
GAGCAGTGTCA
Done.