Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021896.1 Corchorus olitorius cultivar O-4 contig21929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41441

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1503--1709
57
3.6
57
82
8
240
40
22
17
19
1.92
1503--1702
29
6.9
28
77
5
186
39
22
18
20
1.93
7436--7461
13
2.0
13
100
0
52
84
0
15
0
0.62
9172--9664
35
13.9
35
81
3
484
18
19
18
42
1.89
9172--9664
71
7.0
70
80
3
502
18
19
18
42
1.89
9225--9669
213
2.1
212
89
2
678
18
19
18
43
1.89
10413--10501
38
2.3
38
90
0
133
16
16
22
43
1.87
10406--10753
30
10.8
34
77
13
241
20
16
16
46
1.84
10481--10753
30
9.0
30
83
4
305
21
16
15
46
1.83
11265--11340
27
2.8
27
91
0
125
19
21
23
35
1.96
12334--12397
21
3.1
21
93
2
112
26
29
14
29
1.95
17504--17566
31
2.0
31
100
0
126
28
30
12
28
1.93
25073--25146
27
2.7
28
85
6
107
36
24
18
20
1.95
35664--35703
21
1.9
21
85
10
55
15
25
27
32
1.95

Tables:   1

The End!