Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000219.1 Corchorus olitorius cultivar O-4 contig00219, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1245
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.32


Found at i:1202 original size:26 final size:27

Alignment explanation


    Indices: 1141--1198  Score: 75
    Period size: 30  Copynumber: 2.1  Consensus size: 27

       1131 AGTAGATTAT

                                          
       1141 TAATATCTTTTCATAATTAACCTCAAAAAA
          1 TAATATCTTTTCATAATT-A--TCAAAAAA

                                       
       1171 TAATATCTTTTCATAATT-T-AAAAAA
          1 TAATATCTTTTCATAATTATCAAAAAA

               
       1196 TAA
          1 TAA

       1199 ATATTGGATT


Statistics
Matches: 28,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
  25    9  0.32
  26    1  0.04
  30   18  0.64

ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40


Consensus pattern (27 bp):   
TAATATCTTTTCATAATTATCAAAAAA
Done.