Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021901.1 Corchorus olitorius cultivar O-4 contig21934, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4686
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.36

Warning! 3 characters in sequence are not A, C, G, or T


Found at i:4029 original size:13 final size:13

Alignment explanation


    Indices: 4011--4036  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       4001 ACTAAAAATC

                         
       4011 TTATCTTATCTTA
          1 TTATCTTATCTTA

                         
       4024 TTATCTTATCTTA
          1 TTATCTTATCTTA

       4037 CTACTATATA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62


Consensus pattern (13 bp):   
TTATCTTATCTTA

Found at i:4217 original size:26 final size:27

Alignment explanation


    Indices: 4184--4242  Score: 75
    Period size: 30  Copynumber: 2.1  Consensus size: 27

       4174 ATCCAATATT

                                       
       4184 TTATTTTTT-TAAATTATGAAAAGATA
          1 TTATTTTTTGTAAATTATGAAAAGATA

                          *               
       4210 TTATTTTTTGAGGTTAATTATGAAAAGATA
          1 TTATTTTTT---GTAAATTATGAAAAGATA

               
       4240 TTA
          1 TTA

       4243 ATAATCTACT


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  26    9  0.32
  30   19  0.68

ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49


Consensus pattern (27 bp):   
TTATTTTTTGTAAATTATGAAAAGATA
Done.