Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021903.1 Corchorus olitorius cultivar O-4 contig21936, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10104
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29


Found at i:10025 original size:29 final size:29

Alignment explanation


    Indices: 9985--10052  Score: 136
    Period size: 29  Copynumber: 2.3  Consensus size: 29

       9975 CATAAATAAT

                                         
       9985 TTTTTCAATTTGGTCCTTACATTTTTCAA
          1 TTTTTCAATTTGGTCCTTACATTTTTCAA

                                         
      10014 TTTTTCAATTTGGTCCTTACATTTTTCAA
          1 TTTTTCAATTTGGTCCTTACATTTTTCAA

                      
      10043 TTTTTCAATT
          1 TTTTTCAATT

      10053 CCATCCCCTA


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   39  1.00

ACGTcount: A:0.21, C:0.16, G:0.06, T:0.57


Consensus pattern (29 bp):   
TTTTTCAATTTGGTCCTTACATTTTTCAA
Done.