Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01021908.1 Corchorus olitorius cultivar O-4 contig21941, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2451
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:1851 original size:3 final size:3

Alignment explanation


    Indices: 1838--1885  Score: 87
    Period size: 3  Copynumber: 15.7  Consensus size: 3

       1828 CTTTGTTTAC

                                                                        
       1838 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

              
       1884 AA
          1 AA

       1886 ATGGAGTTCG


Statistics
Matches: 44,  Mismatches: 0, Indels: 2
        0.96            0.00        0.04

Matches are distributed among these distances:
   3   41  0.93
   4    3  0.07

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Done.